{"id":"https://openalex.org/W2003022700","doi":"https://doi.org/10.1109/bibe.2008.4696690","title":"A computational approach to microarray universal reference sample","display_name":"A computational approach to microarray universal reference sample","publication_year":2008,"publication_date":"2008-10-01","ids":{"openalex":"https://openalex.org/W2003022700","doi":"https://doi.org/10.1109/bibe.2008.4696690","mag":"2003022700"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2008.4696690","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2008.4696690","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082102542","display_name":"Georgia Tsiliki","orcid":"https://orcid.org/0000-0001-7209-3670"},"institutions":[{"id":"https://openalex.org/I4210105723","display_name":"FORTH Institute of Molecular Biology and Biotechnology","ror":"https://ror.org/01gzszr18","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210105723","https://openalex.org/I8901234"]},{"id":"https://openalex.org/I4210136583","display_name":"Institute of Molecular Biology and Biotechnology","ror":"https://ror.org/03zrdpv47","country_code":"BG","type":"facility","lineage":["https://openalex.org/I4210136583"]}],"countries":["BG","GR"],"is_corresponding":true,"raw_author_name":"Georgia Tsiliki","raw_affiliation_strings":["Institute of Molecular Biology Biotechnology, FORTH, Heraklion, Greece","Inst. of Mol. Biol. & Biotechnol., FORTH, Heraklion"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology Biotechnology, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210105723","https://openalex.org/I4210136583"]},{"raw_affiliation_string":"Inst. of Mol. Biol. & Biotechnol., FORTH, Heraklion","institution_ids":["https://openalex.org/I4210105723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029494061","display_name":"Sofia Kaforou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105723","display_name":"FORTH Institute of Molecular Biology and Biotechnology","ror":"https://ror.org/01gzszr18","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210105723","https://openalex.org/I8901234"]},{"id":"https://openalex.org/I4210136583","display_name":"Institute of Molecular Biology and Biotechnology","ror":"https://ror.org/03zrdpv47","country_code":"BG","type":"facility","lineage":["https://openalex.org/I4210136583"]}],"countries":["BG","GR"],"is_corresponding":false,"raw_author_name":"Sofia Kaforou","raw_affiliation_strings":["Institute of Molecular Biology Biotechnology, FORTH, Heraklion, Greece","Inst. of Mol. Biol. & Biotechnol., FORTH, Heraklion"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology Biotechnology, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210105723","https://openalex.org/I4210136583"]},{"raw_affiliation_string":"Inst. of Mol. Biol. & Biotechnol., FORTH, Heraklion","institution_ids":["https://openalex.org/I4210105723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090060666","display_name":"M. Kapsetaki","orcid":"https://orcid.org/0000-0001-8142-2704"},"institutions":[{"id":"https://openalex.org/I4210136583","display_name":"Institute of Molecular Biology and Biotechnology","ror":"https://ror.org/03zrdpv47","country_code":"BG","type":"facility","lineage":["https://openalex.org/I4210136583"]},{"id":"https://openalex.org/I4210105723","display_name":"FORTH Institute of Molecular Biology and Biotechnology","ror":"https://ror.org/01gzszr18","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210105723","https://openalex.org/I8901234"]}],"countries":["BG","GR"],"is_corresponding":false,"raw_author_name":"Manouela Kapsetaki","raw_affiliation_strings":["Institute of Molecular Biology Biotechnology, FORTH, Heraklion, Greece","Inst. of Mol. Biol. & Biotechnol., FORTH, Heraklion"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology Biotechnology, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210105723","https://openalex.org/I4210136583"]},{"raw_affiliation_string":"Inst. of Mol. Biol. & Biotechnol., FORTH, Heraklion","institution_ids":["https://openalex.org/I4210105723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084193547","display_name":"George Potamias","orcid":"https://orcid.org/0000-0001-8129-4191"},"institutions":[{"id":"https://openalex.org/I4210127348","display_name":"FORTH Institute of Electronic Structure and Laser","ror":"https://ror.org/02a3mhk13","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210127348","https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"George Potamias","raw_affiliation_strings":["Institute of Computer Science, FORTH, Heraklion, Greece","Inst. of Comput. Sci., FORTH, Heraklion"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210127348"]},{"raw_affiliation_string":"Inst. of Comput. Sci., FORTH, Heraklion","institution_ids":["https://openalex.org/I4210127348"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044951417","display_name":"Dimitris Kafetzopoulos","orcid":"https://orcid.org/0000-0002-8086-0371"},"institutions":[{"id":"https://openalex.org/I4210105723","display_name":"FORTH Institute of Molecular Biology and Biotechnology","ror":"https://ror.org/01gzszr18","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210105723","https://openalex.org/I8901234"]},{"id":"https://openalex.org/I4210136583","display_name":"Institute of Molecular Biology and Biotechnology","ror":"https://ror.org/03zrdpv47","country_code":"BG","type":"facility","lineage":["https://openalex.org/I4210136583"]}],"countries":["BG","GR"],"is_corresponding":false,"raw_author_name":"Dimitris Kafetzopoulos","raw_affiliation_strings":["Institute of Molecular Biology Biotechnology, FORTH, Heraklion, Greece","Inst. of Mol. Biol. & Biotechnol., FORTH, Heraklion"],"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology Biotechnology, FORTH, Heraklion, Greece","institution_ids":["https://openalex.org/I4210105723","https://openalex.org/I4210136583"]},{"raw_affiliation_string":"Inst. of Mol. Biol. & Biotechnol., FORTH, Heraklion","institution_ids":["https://openalex.org/I4210105723"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5082102542"],"corresponding_institution_ids":["https://openalex.org/I4210105723","https://openalex.org/I4210136583"],"apc_list":null,"apc_paid":null,"fwci":0.1347,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.52804812,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"3","issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11798","display_name":"Optimal Experimental Design Methods","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6797643899917603},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.6469748616218567},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5791738033294678},{"id":"https://openalex.org/keywords/reference-model","display_name":"Reference model","score":0.5333749055862427},{"id":"https://openalex.org/keywords/reference-data","display_name":"Reference data","score":0.5292025804519653},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.4943368434906006},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.48491841554641724},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48122453689575195},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.42349833250045776},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.4108855426311493},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20222923159599304},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15186339616775513},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08354943990707397},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0712084174156189},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.06689736247062683}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6797643899917603},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.6469748616218567},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5791738033294678},{"id":"https://openalex.org/C150189527","wikidata":"https://www.wikidata.org/wiki/Q356674","display_name":"Reference model","level":2,"score":0.5333749055862427},{"id":"https://openalex.org/C60478076","wikidata":"https://www.wikidata.org/wiki/Q3036835","display_name":"Reference data","level":2,"score":0.5292025804519653},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.4943368434906006},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.48491841554641724},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48122453689575195},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.42349833250045776},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.4108855426311493},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20222923159599304},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15186339616775513},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08354943990707397},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0712084174156189},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.06689736247062683},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2008.4696690","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2008.4696690","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1495359568","https://openalex.org/W1596515083","https://openalex.org/W1925571297","https://openalex.org/W1989076816","https://openalex.org/W2018840144","https://openalex.org/W2056760934","https://openalex.org/W2057367433","https://openalex.org/W2081771213","https://openalex.org/W2096863518","https://openalex.org/W2097255042","https://openalex.org/W2104143846","https://openalex.org/W2128985829","https://openalex.org/W2155173012","https://openalex.org/W2333897677","https://openalex.org/W2495204608","https://openalex.org/W3101813170","https://openalex.org/W6649611171"],"related_works":["https://openalex.org/W2796636403","https://openalex.org/W2364565895","https://openalex.org/W2015700328","https://openalex.org/W2767847608","https://openalex.org/W2911678823","https://openalex.org/W2152648570","https://openalex.org/W2037892364","https://openalex.org/W2319154570","https://openalex.org/W3152114242","https://openalex.org/W3028764459"],"abstract_inverted_index":{"The":[0,39],"choice":[1],"of":[2,14,22,29,41,51,63,95,115,128,142,153],"a":[3,20,27,36,56,81,126],"reference":[4,37,58,83,120,145,156,171],"material":[5],"in":[6,32,66,118],"two-colour":[7],"microarray":[8,68],"experiments":[9],"is":[10,45,131],"an":[11],"important":[12],"issue":[13],"the":[15,42,48,52,87,103,112,119,143,151,154,165,174],"experimental":[16],"design.":[17],"We":[18,73,122,148],"consider":[19],"number":[21],"cell":[23,77,91,96,116,129],"lines":[24,97,117,130],"derived":[25],"from":[26],"variety":[28],"primary":[30],"tissues":[31],"order":[33],"to":[34,46,110,133],"construct":[35],"material.":[38],"aim":[40],"present":[43],"study":[44],"understand":[47],"correlation":[49],"structure":[50],"data":[53],"and":[54,159],"develop":[55],"common":[57,82],"that":[59,124,141,161],"would":[60],"enable":[61],"comparison":[62],"expression":[64],"levels":[65],"multiple":[67],"hybridizations":[69],"with":[70],"high":[71,137],"coverage.":[72],"analyze":[74],"22":[75],"cultured":[76],"line":[78,92],"samples":[79],"using":[80],"pool.":[84],"After":[85],"estimating":[86],"coverage":[88,135,163,166],"for":[89,173],"each":[90],"or":[93,138],"combinations":[94],"based":[98],"on":[99],"methods":[100],"suggested":[101,158],"by":[102,168],"literature,":[104],"we":[105],"employ":[106],"stochastic":[107],"optimization":[108],"techniques":[109],"estimate":[111],"optimal":[113],"set":[114],"sample.":[121],"found":[123,160],"only":[125],"subset":[127],"necessary":[132],"achieve":[134],"as":[136],"higher":[139],"than":[140],"original":[144],"sample":[146,157,172],"used.":[147],"tested":[149],"experimentally":[150],"performance":[152],"new":[155],"its":[162],"outperforms":[164],"achieved":[167],"Stratagenepsilas":[169],"human":[170],"particular":[175],"platform.":[176]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
