{"id":"https://openalex.org/W1992875158","doi":"https://doi.org/10.1109/bibe.2008.4696670","title":"VIP: Visualization of integrated proteomics data","display_name":"VIP: Visualization of integrated proteomics data","publication_year":2008,"publication_date":"2008-10-01","ids":{"openalex":"https://openalex.org/W1992875158","doi":"https://doi.org/10.1109/bibe.2008.4696670","mag":"1992875158"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2008.4696670","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2008.4696670","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071733547","display_name":"\u0395\u03c5\u03b3\u03b5\u03bd\u03af\u03b1 \u0393\u03b9\u03b1\u03bd\u03bd\u03bf\u03c0\u03bf\u03cd\u03bb\u03bf\u03c5","orcid":null},"institutions":[{"id":"https://openalex.org/I158716096","display_name":"University of Peloponnese","ror":"https://ror.org/04d4d3c02","country_code":"GR","type":"education","lineage":["https://openalex.org/I158716096"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Eugenia G. Giannopoulou","raw_affiliation_strings":["Department of Computer Science and Technology, University of Peloponnese, Tripoli, Greece","Dept. of Comput. Sci. & Technol., Univ. of Peloponnese, Tripolis"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Peloponnese, Tripoli, Greece","institution_ids":["https://openalex.org/I158716096"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Technol., Univ. of Peloponnese, Tripolis","institution_ids":["https://openalex.org/I158716096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074951699","display_name":"George Lepouras","orcid":"https://orcid.org/0000-0001-6094-3308"},"institutions":[{"id":"https://openalex.org/I158716096","display_name":"University of Peloponnese","ror":"https://ror.org/04d4d3c02","country_code":"GR","type":"education","lineage":["https://openalex.org/I158716096"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"George Lepouras","raw_affiliation_strings":["Department of Computer Science and Technology, University of Peloponnese, Tripoli, Greece","Dept. of Comput. Sci. & Technol., Univ. of Peloponnese, Tripolis"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, University of Peloponnese, Tripoli, Greece","institution_ids":["https://openalex.org/I158716096"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Technol., Univ. of Peloponnese, Tripolis","institution_ids":["https://openalex.org/I158716096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070325341","display_name":"\u0397\u03bb\u03af\u03b1\u03c2 \u03a3. \u039c\u03b1\u03bd\u03c9\u03bb\u03ac\u03ba\u03bf\u03c2","orcid":"https://orcid.org/0000-0001-6376-0419"},"institutions":[{"id":"https://openalex.org/I200777214","display_name":"National and Kapodistrian University of Athens","ror":"https://ror.org/04gnjpq42","country_code":"GR","type":"education","lineage":["https://openalex.org/I200777214"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Elias S. Manolakos","raw_affiliation_strings":["Department of Informatics and Telecommunications, University of Athens (NKUA), Athens, Greece","Dept. of Inf. & Telecommun., Univ. of Athens, Athens"],"affiliations":[{"raw_affiliation_string":"Department of Informatics and Telecommunications, University of Athens (NKUA), Athens, Greece","institution_ids":["https://openalex.org/I200777214"]},{"raw_affiliation_string":"Dept. of Inf. & Telecommun., Univ. of Athens, Athens","institution_ids":["https://openalex.org/I200777214"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5071733547"],"corresponding_institution_ids":["https://openalex.org/I158716096"],"apc_list":null,"apc_paid":null,"fwci":0.161,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.49366541,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"4","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8266794085502625},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.7904049158096313},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7403866648674011},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7383666634559631},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5088667869567871},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.4924355447292328},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43768760561943054},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3502809405326843},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11560991406440735},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11510926485061646}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8266794085502625},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.7904049158096313},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7403866648674011},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7383666634559631},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5088667869567871},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.4924355447292328},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43768760561943054},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3502809405326843},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11560991406440735},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11510926485061646},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2008.4696670","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2008.4696670","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 8th IEEE International Conference on BioInformatics and BioEngineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W315075995","https://openalex.org/W1965942536","https://openalex.org/W1971879901","https://openalex.org/W1991165514","https://openalex.org/W2003463139","https://openalex.org/W2011716229","https://openalex.org/W2023096047","https://openalex.org/W2060372462","https://openalex.org/W2086470186","https://openalex.org/W2128658216","https://openalex.org/W2134637894","https://openalex.org/W2138293015","https://openalex.org/W2147659294","https://openalex.org/W2153217804","https://openalex.org/W2155254562","https://openalex.org/W2166828145","https://openalex.org/W2751834478","https://openalex.org/W3138790538","https://openalex.org/W3146982351","https://openalex.org/W4248900818","https://openalex.org/W6610993166"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2923661510","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W3003759491","https://openalex.org/W2542318691","https://openalex.org/W2547096368"],"abstract_inverted_index":{"The":[0,19,126],"post-genomic":[1],"era":[2],"is":[3],"characterized":[4],"by":[5,120],"the":[6,40,49,83,97,106,118,124,162],"rapid":[7],"data":[8,163],"accumulation":[9],"leading":[10],"to":[11,99,105],"unwieldy":[12],"and":[13,86,115,122,144,154,165],"large":[14],"volumes":[15],"of":[16,24,42,51,82,157],"biological":[17],"data.":[18],"proteomics":[20,44,53,70,84,135],"results":[21],"(large":[22],"sets":[23],"identified":[25],"proteins":[26],"or":[27,75],"peptides)":[28],"that":[29],"originate":[30],"from":[31],"several":[32],"workflow":[33],"steps,":[34],"play":[35],"an":[36,65],"important":[37],"role":[38],"in":[39,58,90,137],"analysis":[41,85,107,164],"a":[43,47,138,152],"experiment.":[45],"As":[46],"result,":[48],"area":[50],"high-through-put":[52],"created":[54],"new":[55],"visualization":[56,67,119,129],"challenges":[57],"interpreting":[59],"large-scale":[60],"datasets.":[61],"We":[62],"present":[63],"VIP,":[64],"interactive":[66],"tool":[68,95],"for":[69,141],"data,":[71],"which":[72],"integrates":[73],"protein":[74],"peptide":[76],"features":[77,103],"emanating":[78],"at":[79,133,150],"every":[80],"step":[81],"combines":[87],"them":[88],"visually":[89],"synthetic":[91,127],"maps.":[92],"Our":[93],"novel":[94],"offers":[96],"flexibility":[98],"choose":[100],"any":[101],"desired":[102],"according":[104],"objectives,":[108],"examine":[109],"simultaneously":[110],"more":[111],"than":[112],"one":[113],"maps":[114,128],"interact":[116],"with":[117],"querying":[121],"filtering":[123],"results.":[125],"aims":[130],"not":[131],"only":[132],"summarizing":[134],"experiments":[136],"unified":[139],"manner":[140],"both":[142],"2DE-MS":[143],"LC-MS":[145],"based":[146],"analyses,":[147],"but":[148],"also":[149],"providing":[151],"quick":[153],"combined":[155],"overview":[156],"protein/peptide":[158],"features,":[159],"thus":[160],"facilitating":[161],"interpretation.":[166]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}