{"id":"https://openalex.org/W1997138240","doi":"https://doi.org/10.1109/bibe.2007.4375738","title":"Combining Semantics, Context, and Statistical Evidence in Genomics Literature Search","display_name":"Combining Semantics, Context, and Statistical Evidence in Genomics Literature Search","publication_year":2007,"publication_date":"2007-10-01","ids":{"openalex":"https://openalex.org/W1997138240","doi":"https://doi.org/10.1109/bibe.2007.4375738","mag":"1997138240"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2007.4375738","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375738","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034725251","display_name":"Jay Urbain","orcid":null},"institutions":[{"id":"https://openalex.org/I180949307","display_name":"Illinois Institute of Technology","ror":"https://ror.org/037t3ry66","country_code":"US","type":"education","lineage":["https://openalex.org/I180949307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jay Urbain","raw_affiliation_strings":["Information Retrieval Laboratory, Illinois Institute of Technology, Chicago, IL, USA","Illinois Institute of Technology; Chicago"],"affiliations":[{"raw_affiliation_string":"Information Retrieval Laboratory, Illinois Institute of Technology, Chicago, IL, USA","institution_ids":["https://openalex.org/I180949307"]},{"raw_affiliation_string":"Illinois Institute of Technology; Chicago","institution_ids":["https://openalex.org/I180949307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036610566","display_name":"Nazli Goharian","orcid":null},"institutions":[{"id":"https://openalex.org/I180949307","display_name":"Illinois Institute of Technology","ror":"https://ror.org/037t3ry66","country_code":"US","type":"education","lineage":["https://openalex.org/I180949307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nazli Goharian","raw_affiliation_strings":["Information Retrieval Laboratory, Illinois Institute of Technology, Chicago, IL, USA","Illinois Institute of Technology; Chicago"],"affiliations":[{"raw_affiliation_string":"Information Retrieval Laboratory, Illinois Institute of Technology, Chicago, IL, USA","institution_ids":["https://openalex.org/I180949307"]},{"raw_affiliation_string":"Illinois Institute of Technology; Chicago","institution_ids":["https://openalex.org/I180949307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110275365","display_name":"Ophir Frieder","orcid":null},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ophir Frieder","raw_affiliation_strings":["Computer Science Department, George town University, Washington D.C., DC, USA","Computer Science Department, Georgetown University, Washington, DC. ophir@cs.georgetown.edu"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, George town University, Washington D.C., DC, USA","institution_ids":["https://openalex.org/I184565670"]},{"raw_affiliation_string":"Computer Science Department, Georgetown University, Washington, DC. ophir@cs.georgetown.edu","institution_ids":["https://openalex.org/I184565670"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034725251"],"corresponding_institution_ids":["https://openalex.org/I180949307"],"apc_list":null,"apc_paid":null,"fwci":2.4182,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.89697728,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"4","issue":null,"first_page":"1313","last_page":"1317"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.83063805103302},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.789156436920166},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.7066372036933899},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6475420594215393},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6042872071266174},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5643355250358582},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.4907296895980835},{"id":"https://openalex.org/keywords/query-expansion","display_name":"Query expansion","score":0.4355493485927582},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.41254496574401855},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3664626479148865}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.83063805103302},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.789156436920166},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.7066372036933899},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6475420594215393},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6042872071266174},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5643355250358582},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.4907296895980835},{"id":"https://openalex.org/C99016210","wikidata":"https://www.wikidata.org/wiki/Q5488129","display_name":"Query expansion","level":2,"score":0.4355493485927582},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.41254496574401855},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3664626479148865},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2007.4375738","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375738","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.145.9936","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.145.9936","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ir.iit.edu/publications/downloads/bibe07UrbainX5.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8100000023841858,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W42262126","https://openalex.org/W1508412218","https://openalex.org/W1522989131","https://openalex.org/W1534714852","https://openalex.org/W1587004086","https://openalex.org/W1973415432","https://openalex.org/W1991154713","https://openalex.org/W2019509999","https://openalex.org/W2077428231","https://openalex.org/W2078739211","https://openalex.org/W2098162425","https://openalex.org/W2103201239","https://openalex.org/W2132094268","https://openalex.org/W2135937947","https://openalex.org/W2147964825","https://openalex.org/W2153702481","https://openalex.org/W2203835818","https://openalex.org/W2917056928","https://openalex.org/W2917293077","https://openalex.org/W2917460666","https://openalex.org/W4236275144","https://openalex.org/W4242141871","https://openalex.org/W4252417799","https://openalex.org/W6601721797","https://openalex.org/W6630556732","https://openalex.org/W6631352893","https://openalex.org/W6635083746","https://openalex.org/W6648116614","https://openalex.org/W6678356393","https://openalex.org/W6679712908","https://openalex.org/W6681662404","https://openalex.org/W6687814304"],"related_works":["https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W2048865712","https://openalex.org/W1976265003","https://openalex.org/W2370378377","https://openalex.org/W4237510188","https://openalex.org/W2130160813","https://openalex.org/W2054476758","https://openalex.org/W2350613701","https://openalex.org/W2130597667"],"abstract_inverted_index":{"We":[0,92],"present":[1],"an":[2,67],"information":[3,69,146,154],"retrieval":[4,78,134],"model":[5,43],"for":[6,16,44,80],"combining":[7,82],"evidence":[8],"from":[9],"concept-based":[10],"semantics,":[11],"term":[12,85],"statistics,":[13],"and":[14,54,76,101,112,130,143],"context":[15,55,94],"improving":[17],"search":[18,119],"precision":[19],"of":[20,30,51,90,99,104,124,127,186],"genomics":[21],"literature":[22,47],"by":[23,95,175,179],"accurately":[24],"identifying":[25],"concise,":[26],"variable":[27,96],"length":[28,97],"passages":[29,98],"text":[31,100],"to":[32,72],"answer":[33],"a":[34,40,57,77],"user":[35],"query.":[36],"The":[37,62],"system":[38],"combines":[39],"dimensional":[41],"data":[42],"indexing":[45],"scientific":[46],"at":[48,87],"multiple":[49,88],"levels":[50,89,103,126],"document":[52,105,138],"structure":[53,107],"with":[56,84],"rule-based":[58],"query":[59,63,74],"processing":[60,64],"algorithm.":[61],"algorithm":[65],"uses":[66],"iterative":[68],"extraction":[70],"technique":[71],"identify":[73],"concepts,":[75],"function":[79],"systematically":[81],"concepts":[83],"statistics":[86],"context.":[91],"define":[93],"different":[102],"lexical":[106],"including":[108],"terms,":[109],"sentences,":[110],"paragraphs,":[111],"entire":[113],"documents.":[114],"Our":[115],"results":[116,120,157,171],"demonstrate":[117],"improved":[118],"in":[121],"the":[122,165,170,173,180],"presence":[123],"varying":[125],"semantic":[128],"evidence,":[129],"higher":[131],"performance":[132],"using":[133,148],"functions":[135],"that":[136],"combine":[137],"as":[139,141,177],"well":[140],"sentence":[142,150],"passage":[144,152],"level":[145,153],"versus":[147],"document,":[149],"or":[151],"alone.":[155],"Initial":[156],"are":[158],"promising.":[159],"When":[160],"ranking":[161],"documents":[162],"based":[163],"on":[164],"most":[166],"relevant":[167],"extracted":[168],"passages,":[169],"exceed":[172],"state-of-the-art":[174],"13.89%":[176],"assessed":[178],"TREC":[181],"2005":[182],"Genomics":[183],"track":[184],"collection":[185],"4.5":[187],"million":[188],"MEDLINE":[189],"citations.":[190]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
