{"id":"https://openalex.org/W1966415183","doi":"https://doi.org/10.1109/bibe.2007.4375734","title":"Self-Optimizing Parallel Algorithms for Haplotype Reconstruction and Their Evaluation on the JPT and CHB Genotype Data","display_name":"Self-Optimizing Parallel Algorithms for Haplotype Reconstruction and Their Evaluation on the JPT and CHB Genotype Data","publication_year":2007,"publication_date":"2007-10-01","ids":{"openalex":"https://openalex.org/W1966415183","doi":"https://doi.org/10.1109/bibe.2007.4375734","mag":"1966415183"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2007.4375734","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375734","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062070316","display_name":"Drago\u015f Trinc\u0103","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dragos Trinca","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","University of Connecticut Storrs"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"University of Connecticut Storrs","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034177039","display_name":"Sanguthevar Rajasekaran","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanguthevar Rajasekaran","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","University of Connecticut Storrs"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"University of Connecticut Storrs","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.06999748,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"7","issue":null,"first_page":"1294","last_page":"1298"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6527960300445557},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6347135901451111},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.6033538579940796},{"id":"https://openalex.org/keywords/parallel-algorithm","display_name":"Parallel algorithm","score":0.5142831206321716},{"id":"https://openalex.org/keywords/integer-programming","display_name":"Integer programming","score":0.49220433831214905},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4380286633968353},{"id":"https://openalex.org/keywords/algorithm-design","display_name":"Algorithm design","score":0.41693341732025146},{"id":"https://openalex.org/keywords/integer","display_name":"Integer (computer science)","score":0.4125077426433563},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.320483535528183},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.12689679861068726},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12243393063545227}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6527960300445557},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6347135901451111},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.6033538579940796},{"id":"https://openalex.org/C120373497","wikidata":"https://www.wikidata.org/wiki/Q1087987","display_name":"Parallel algorithm","level":2,"score":0.5142831206321716},{"id":"https://openalex.org/C56086750","wikidata":"https://www.wikidata.org/wiki/Q6042592","display_name":"Integer programming","level":2,"score":0.49220433831214905},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4380286633968353},{"id":"https://openalex.org/C106516650","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm design","level":2,"score":0.41693341732025146},{"id":"https://openalex.org/C97137487","wikidata":"https://www.wikidata.org/wiki/Q729138","display_name":"Integer (computer science)","level":2,"score":0.4125077426433563},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.320483535528183},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.12689679861068726},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12243393063545227},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2007.4375734","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375734","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1990390726","https://openalex.org/W2022005040","https://openalex.org/W2030866061","https://openalex.org/W2101324644","https://openalex.org/W2109347434","https://openalex.org/W2110755408","https://openalex.org/W2138171990","https://openalex.org/W2159713662","https://openalex.org/W6676200504","https://openalex.org/W6683939248"],"related_works":["https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W2047683846","https://openalex.org/W2044902158","https://openalex.org/W2109912052","https://openalex.org/W1711527768","https://openalex.org/W2009290884","https://openalex.org/W2161236781","https://openalex.org/W3003034148","https://openalex.org/W1997494266"],"abstract_inverted_index":{"The":[0,15],"haplotype":[1,42,56],"reconstruction":[2,43,57],"problem":[3,22],"has":[4],"received":[5],"a":[6],"great":[7],"deal":[8],"of":[9],"attention":[10],"in":[11],"the":[12,66],"bioinformatics":[13],"literature.":[14],"algorithms":[16,40,54,70],"proposed":[17,67,88],"thus":[18],"far":[19],"for":[20,41,55],"this":[21,34],"can":[23,71],"be":[24,72],"grouped":[25],"into":[26],"two":[27],"main":[28],"categories:":[29],"statistical":[30],"and":[31],"combinatorial.":[32],"In":[33],"paper,":[35],"we":[36,49],"focus":[37],"on":[38,45,59],"combinatorial":[39],"based":[44,58],"Clark's":[46,60,81],"method.":[47,61],"Specifically,":[48],"propose":[50],"several":[51],"self-optimizing":[52,68],"parallel":[53,69],"Experimental":[62],"results":[63],"show":[64],"that":[65],"viewed":[73],"as":[74],"an":[75],"efficient":[76],"alternative":[77],"not":[78],"only":[79],"to":[80,85],"algorithm,":[82],"but":[83],"also":[84],"some":[86],"previously":[87],"(integer)":[89],"linear":[90],"programming":[91],"formulations.":[92]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
