{"id":"https://openalex.org/W1966157917","doi":"https://doi.org/10.1109/bibe.2007.4375692","title":"Gene expression profiling and machine learning to understand and predict primary graft dysfunction","display_name":"Gene expression profiling and machine learning to understand and predict primary graft dysfunction","publication_year":2007,"publication_date":"2007-10-01","ids":{"openalex":"https://openalex.org/W1966157917","doi":"https://doi.org/10.1109/bibe.2007.4375692","mag":"1966157917"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2007.4375692","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375692","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023904712","display_name":"Monika Ray","orcid":"https://orcid.org/0000-0001-9340-4415"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]},{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Monika Ray","raw_affiliation_strings":["Computer Science and Engineering, Washington University, Saint Louis, MO, USA","Washington Univ., Washington"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Washington University, Saint Louis, MO, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Washington Univ., Washington","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045377550","display_name":"Sekhar Dharmarajan","orcid":null},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sekhar Dharmarajan","raw_affiliation_strings":["Department of Surgery, School of Medicine, Washington University, Saint Louis, MO, USA","Department of Surgery, Washington University School of Medicine St. Louis, Missouri 63110"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, School of Medicine, Washington University, Saint Louis, MO, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Department of Surgery, Washington University School of Medicine St. Louis, Missouri 63110","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022233425","display_name":"Johannes Freudenberg","orcid":"https://orcid.org/0000-0002-5327-4414"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Johannes Freudenberg","raw_affiliation_strings":["Biomedical Informatics, Cincinnati Children''s Hospital Medical Research Center, Cincinnati, OH, USA","Biomedical Informatics, Cincinnati Children's Hospital Medical Centre, Cincinnati OH 45229"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Informatics, Cincinnati Children''s Hospital Medical Research Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Biomedical Informatics, Cincinnati Children's Hospital Medical Centre, Cincinnati OH 45229","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104023936","display_name":"G. Alexander Patterson","orcid":null},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Alexander Patterson","raw_affiliation_strings":["Department of Surgery, School of Medicine, Washington University, Saint Louis, MO, USA","Department of Surgery, Washington University School of Medicine St. Louis, Missouri 63110"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Surgery, School of Medicine, Washington University, Saint Louis, MO, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Department of Surgery, Washington University School of Medicine St. Louis, Missouri 63110","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068659777","display_name":"Weixiong Zhang","orcid":"https://orcid.org/0000-0002-4998-9791"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weixiong Zhang","raw_affiliation_strings":["Computer Science and Engineering, Washington University, Saint Louis, MO, USA","Computer Science and Engineering, Washington University, St. Louis, Missouri 63130. Email: zhang@cse.wustl.edu, Tel: 3149358788, Fax: 3149357302"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering, Washington University, Saint Louis, MO, USA","institution_ids":["https://openalex.org/I204465549"]},{"raw_affiliation_string":"Computer Science and Engineering, Washington University, St. Louis, Missouri 63130. Email: zhang@cse.wustl.edu, Tel: 3149358788, Fax: 3149357302","institution_ids":["https://openalex.org/I204465549"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"58","issue":null,"first_page":"1076","last_page":"1080"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11189","display_name":"Transplantation: Methods and Outcomes","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11189","display_name":"Transplantation: Methods and Outcomes","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.7580596208572388},{"id":"https://openalex.org/keywords/lung-transplantation","display_name":"Lung transplantation","score":0.5989519357681274},{"id":"https://openalex.org/keywords/transplantation","display_name":"Transplantation","score":0.5186737775802612},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5151068568229675},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5072376728057861},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.4969477951526642},{"id":"https://openalex.org/keywords/lung","display_name":"Lung","score":0.47849932312965393},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.46169790625572205},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44267603754997253},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.41749876737594604},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.414633572101593},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.35878515243530273},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27827364206314087},{"id":"https://openalex.org/keywords/surgery","display_name":"Surgery","score":0.22161906957626343},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1845390796661377},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13349473476409912}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.7580596208572388},{"id":"https://openalex.org/C2781448352","wikidata":"https://www.wikidata.org/wiki/Q1637912","display_name":"Lung transplantation","level":3,"score":0.5989519357681274},{"id":"https://openalex.org/C2911091166","wikidata":"https://www.wikidata.org/wiki/Q106419912","display_name":"Transplantation","level":2,"score":0.5186737775802612},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5151068568229675},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5072376728057861},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.4969477951526642},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.47849932312965393},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.46169790625572205},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44267603754997253},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.41749876737594604},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.414633572101593},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.35878515243530273},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27827364206314087},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.22161906957626343},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1845390796661377},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13349473476409912},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2007.4375692","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375692","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7200000286102295}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W164523229","https://openalex.org/W168264400","https://openalex.org/W1973614663","https://openalex.org/W1979432512","https://openalex.org/W1990952555","https://openalex.org/W1997737844","https://openalex.org/W2000549992","https://openalex.org/W2008056655","https://openalex.org/W2010332902","https://openalex.org/W2010573398","https://openalex.org/W2010637767","https://openalex.org/W2015422162","https://openalex.org/W2047263793","https://openalex.org/W2050544650","https://openalex.org/W2057304348","https://openalex.org/W2059467226","https://openalex.org/W2060729812","https://openalex.org/W2063701339","https://openalex.org/W2085461684","https://openalex.org/W2090840588","https://openalex.org/W2097557760","https://openalex.org/W2102956189","https://openalex.org/W2105381419","https://openalex.org/W2107855787","https://openalex.org/W2108728387","https://openalex.org/W2127506337","https://openalex.org/W2129157162","https://openalex.org/W2130031747","https://openalex.org/W2130122936","https://openalex.org/W2133221946","https://openalex.org/W2136472036","https://openalex.org/W2146102937","https://openalex.org/W2155887397","https://openalex.org/W2157795344","https://openalex.org/W2159936936","https://openalex.org/W2164975531","https://openalex.org/W2165305878","https://openalex.org/W2299546031","https://openalex.org/W2326126331","https://openalex.org/W2540471796","https://openalex.org/W4294107304","https://openalex.org/W4298442577","https://openalex.org/W6701693304"],"related_works":["https://openalex.org/W2090763504","https://openalex.org/W2161444195","https://openalex.org/W148178222","https://openalex.org/W2985540061","https://openalex.org/W2589019771","https://openalex.org/W2104657898","https://openalex.org/W2185012154","https://openalex.org/W1948992892","https://openalex.org/W1886884218","https://openalex.org/W4252521128"],"abstract_inverted_index":{"Lung":[0],"transplantation":[1,114,132],"is":[2,78,121],"the":[3,21,33,59,101,122,135],"treatment":[4],"of":[5,26,36,55,137],"choice":[6],"for":[7,107,113,131,141,147],"end-stage":[8],"pulmonary":[9],"diseases.":[10],"A":[11],"limited":[12],"donor":[13,27,65,93,97,148],"supply":[14],"has":[15],"resulted":[16],"in":[17,61],"4000":[18],"patients":[19],"on":[20,100],"waiting":[22],"list.":[23],"Currently,":[24],"10-20%":[25],"organs":[28],"are":[29],"deemed":[30],"suitable":[31,96,109],"under":[32],"selection":[34],"criteria,":[35],"which":[37],"15-25%":[38],"fails":[39],"due":[40],"to":[41,51,79,90,126],"primary":[42],"graft":[43],"dysfunction":[44],"(PGD).":[45],"In":[46],"this":[47],"study,":[48],"we":[49],"attempt":[50,125],"further":[52],"our":[53],"understanding":[54],"PGD":[56,69],"by":[57],"observing":[58],"changes":[60],"gene":[62,102],"expression":[63,103],"across":[64],"lungs":[66,94,112,129],"that":[67,72],"developed":[68],"versus":[70],"those":[71],"did":[73],"not.":[74],"Our":[75],"second":[76],"goal":[77],"use":[80,127],"a":[81,116,138],"machine":[82,88,144],"learning":[83,145],"tool":[84],"-":[85],"support":[86],"vector":[87],"(SVM),":[89],"distinguish":[91],"unsuitable":[92,111],"from":[95],"lungs,":[98],"based":[99],"data.":[104],"Classification":[105],"results":[106],"distinguishing":[108],"and":[110,133],"using":[115],"SVM":[117],"were":[118],"promising.":[119],"This":[120],"first":[123],"such":[124],"human":[128],"used":[130],"combine":[134],"identification":[136],"molecular":[139],"signature":[140],"PGD,":[142],"with":[143],"methods":[146],"lung":[149],"prediction.":[150]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
