{"id":"https://openalex.org/W2014112502","doi":"https://doi.org/10.1109/bibe.2007.4375661","title":"3D Spectrum Analysis of DNA Sequence: Application to Caenorhabditis elegans Genome","display_name":"3D Spectrum Analysis of DNA Sequence: Application to Caenorhabditis elegans Genome","publication_year":2007,"publication_date":"2007-10-01","ids":{"openalex":"https://openalex.org/W2014112502","doi":"https://doi.org/10.1109/bibe.2007.4375661","mag":"2014112502"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2007.4375661","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375661","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001060727","display_name":"Afef Elloumi Oueslati","orcid":"https://orcid.org/0000-0001-6278-0717"},"institutions":[{"id":"https://openalex.org/I4210131288","display_name":"National Engineering School of Tunis","ror":"https://ror.org/03b1zjt31","country_code":"TN","type":"education","lineage":["https://openalex.org/I4210131288","https://openalex.org/I63596082"]}],"countries":["TN"],"is_corresponding":true,"raw_author_name":"Afef Elloumi Oueslati","raw_affiliation_strings":["D\u00e9partement de G\u00e9nie Electrique, Unite Signal Image et Reconnaissance de Formes, Tunis, Tunisie","ENIT, Tunis"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de G\u00e9nie Electrique, Unite Signal Image et Reconnaissance de Formes, Tunis, Tunisie","institution_ids":[]},{"raw_affiliation_string":"ENIT, Tunis","institution_ids":["https://openalex.org/I4210131288"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081557386","display_name":"Noureddine Ellouze","orcid":"https://orcid.org/0000-0003-0421-0278"},"institutions":[{"id":"https://openalex.org/I4210131288","display_name":"National Engineering School of Tunis","ror":"https://ror.org/03b1zjt31","country_code":"TN","type":"education","lineage":["https://openalex.org/I4210131288","https://openalex.org/I63596082"]}],"countries":["TN"],"is_corresponding":false,"raw_author_name":"Noureddine Ellouze","raw_affiliation_strings":["D\u00e9partement de G\u00e9nie Electrique, Unite Signal Image et Reconnaissance de Formes, Tunis, Tunisie","ENIT, Tunis"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de G\u00e9nie Electrique, Unite Signal Image et Reconnaissance de Formes, Tunis, Tunisie","institution_ids":[]},{"raw_affiliation_string":"ENIT, Tunis","institution_ids":["https://openalex.org/I4210131288"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063621759","display_name":"Zied Lachiri","orcid":"https://orcid.org/0000-0002-1289-5089"},"institutions":[{"id":"https://openalex.org/I42731748","display_name":"National Institute of Applied Science and Technology","ror":"https://ror.org/00qn2rd91","country_code":"TN","type":"facility","lineage":["https://openalex.org/I42731748"]},{"id":"https://openalex.org/I196454796","display_name":"Institut National des Sciences Appliqu\u00e9es de Toulouse","ror":"https://ror.org/01h8pf755","country_code":"FR","type":"education","lineage":["https://openalex.org/I196454796","https://openalex.org/I4405258862"]}],"countries":["FR","TN"],"is_corresponding":false,"raw_author_name":"Zied Lachiri","raw_affiliation_strings":["D\u00e9partement de G\u00e9nie Physique et Instrumentation, Tunis, Tunisie","D\u00e9partement de G\u00e9nie Physique et Instrumentation, INSAT, BP 676, Centre Urbain Cedex, 1080, Tunis, Tunisie. zied.lachiri@enit.rnu.tn"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de G\u00e9nie Physique et Instrumentation, Tunis, Tunisie","institution_ids":[]},{"raw_affiliation_string":"D\u00e9partement de G\u00e9nie Physique et Instrumentation, INSAT, BP 676, Centre Urbain Cedex, 1080, Tunis, Tunisie. zied.lachiri@enit.rnu.tn","institution_ids":["https://openalex.org/I196454796","https://openalex.org/I42731748"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5001060727"],"corresponding_institution_ids":["https://openalex.org/I4210131288"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.09130729,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"864","last_page":"871"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7264269590377808},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.6954372525215149},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5188178420066833},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5067878365516663},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5008544921875},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48965245485305786},{"id":"https://openalex.org/keywords/base-pair","display_name":"Base pair","score":0.45529770851135254},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4202408194541931},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2325524389743805}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7264269590377808},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.6954372525215149},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5188178420066833},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5067878365516663},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5008544921875},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48965245485305786},{"id":"https://openalex.org/C185581394","wikidata":"https://www.wikidata.org/wiki/Q145911","display_name":"Base pair","level":3,"score":0.45529770851135254},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4202408194541931},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2325524389743805}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2007.4375661","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375661","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.596.9094","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.596.9094","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ece.drexel.edu/gailr/class_papers/3d_spec_of_sequences.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1490599187","https://openalex.org/W1766888123","https://openalex.org/W1973729666","https://openalex.org/W1982500739","https://openalex.org/W2003569868","https://openalex.org/W2004469916","https://openalex.org/W2013571070","https://openalex.org/W2024213282","https://openalex.org/W2029873987","https://openalex.org/W2047299293","https://openalex.org/W2048756287","https://openalex.org/W2067003022","https://openalex.org/W2079797742","https://openalex.org/W2080667183","https://openalex.org/W2086711232","https://openalex.org/W2087440101","https://openalex.org/W2087814426","https://openalex.org/W2090297232","https://openalex.org/W2122574122","https://openalex.org/W2478884216","https://openalex.org/W2923287816","https://openalex.org/W4236279891","https://openalex.org/W6637883433","https://openalex.org/W6662834861","https://openalex.org/W6673257531","https://openalex.org/W6760542928"],"related_works":["https://openalex.org/W1996263103","https://openalex.org/W2396392055","https://openalex.org/W2068036173","https://openalex.org/W1963514225","https://openalex.org/W2008118406","https://openalex.org/W2090753126","https://openalex.org/W1502749126","https://openalex.org/W2034653027","https://openalex.org/W2389264407","https://openalex.org/W1984441743"],"abstract_inverted_index":{"A":[0],"Fourier":[1],"transform":[2],"technique":[3],"has":[4],"been":[5],"used":[6],"to":[7,27,61,87],"enhance":[8],"the":[9,14,36,47,54,62,81,84,91,97,104,112,121,125,135,139,162,168,172],"genome":[10,130,169],"periodicities":[11,22,149],"when":[12],"analyzing":[13],"distributions":[15],"of":[16,53,64,77,164],"independent":[17],"nucleotides":[18],"and":[19,38,170],"dinucleotides.":[20],"These":[21],"are":[23,143,150],"varying":[24],"from":[25],"2":[26],"500":[28],"bp.":[29],"In":[30,66],"this":[31,118,165],"paper":[32],"we":[33],"focus":[34],"on":[35],"3":[37],"10.5":[39,88,107],"periodicities.":[40],"The":[41,51],"3-base":[42],"periodicity":[43,166],"is":[44,59,72,94,108],"characteristic":[45],"for":[46,96],"protein-coding":[48],"sequences":[49],"only.":[50],"source":[52],"approximately":[55],"10.5-base":[56],"sequence":[57,93],"period":[58,85],"related":[60],"deformability":[63],"DNA.":[65],"fact,":[67],"DNA":[68,92,136],"folding":[69],"in":[70,124],"chromatin":[71],"facilitated":[73],"by":[74,152],"periodical":[75],"positioning":[76],"some":[78],"dinucleotides":[79],"along":[80,167],"sequences,":[82],"with":[83],"close":[86],"bases.":[89],"When":[90],"encoded":[95],"signal":[98],"'AA'":[99],"or":[100,102],"'TT'":[101],"'TA'":[103],"peak":[105,119],"at":[106],"locally":[109],"strengthened.":[110],"For":[111],"Caenorhabditis":[113],"elegans":[114],"(C.":[115],"Elegans)":[116],"genome,":[117],"becomes":[120],"dominant":[122],"feature":[123],"transform.":[126],"Studying":[127],"one":[128],"organism's":[129],"requires":[131],"three":[132],"steps.":[133],"First,":[134],"coding":[137],"method:":[138],"DNA's":[140],"string":[141],"data":[142],"transformed":[144],"into":[145],"numerical":[146],"signal.":[147],"Second,":[148],"detected":[151],"spectral":[153],"analysis.":[154],"Third,":[155],"a":[156],"3D":[157],"graphical":[158],"representation":[159],"allows":[160],"following":[161],"evolution":[163],"facilitating":[171],"specific":[173],"regions":[174],"location.":[175]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}