{"id":"https://openalex.org/W2002901334","doi":"https://doi.org/10.1109/bibe.2007.4375620","title":"A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg)","display_name":"A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg)","publication_year":2007,"publication_date":"2007-10-01","ids":{"openalex":"https://openalex.org/W2002901334","doi":"https://doi.org/10.1109/bibe.2007.4375620","mag":"2002901334"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2007.4375620","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375620","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100916245","display_name":"Jiazheng Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I110378019","display_name":"Southern Illinois University Carbondale","ror":"https://ror.org/049kefs16","country_code":"US","type":"education","lineage":["https://openalex.org/I110378019","https://openalex.org/I2801502357"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiazheng Yuan","raw_affiliation_strings":["Department of Plant Biology, Southem Illinois University, Carbondale, Carbondale, IL, USA","Department of Plant Biology, Southem Illinois University, Carbondale, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Biology, Southem Illinois University, Carbondale, Carbondale, IL, USA","institution_ids":["https://openalex.org/I110378019"]},{"raw_affiliation_string":"Department of Plant Biology, Southem Illinois University, Carbondale, IL, USA","institution_ids":["https://openalex.org/I110378019"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110547873","display_name":"Mengxia Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I110378019","display_name":"Southern Illinois University Carbondale","ror":"https://ror.org/049kefs16","country_code":"US","type":"education","lineage":["https://openalex.org/I110378019","https://openalex.org/I2801502357"]},{"id":"https://openalex.org/I4210094983","display_name":"ScienceSouth","ror":"https://ror.org/00my6s217","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210094983"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengxia Zhu","raw_affiliation_strings":["Department of Computer Science, Southem Illinois University, Carbondale, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Southem Illinois University, Carbondale, IL, USA","institution_ids":["https://openalex.org/I110378019","https://openalex.org/I4210094983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101668449","display_name":"Muhammad Javed Iqbal","orcid":"https://orcid.org/0000-0002-2035-4004"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Javed Iqbal","raw_affiliation_strings":["Department of Plant Soil Sciences and Agriculture System, Southem Illinois University, Carbondale, Carbondale, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Plant Soil Sciences and Agriculture System, Southem Illinois University, Carbondale, Carbondale, IL, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037410384","display_name":"Jack Yang","orcid":"https://orcid.org/0000-0003-3589-6807"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jack Y. Yang","raw_affiliation_strings":["Harvard Medical School, Harvard University, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard Medical School, Harvard University, Cambridge, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088810024","display_name":"David A. Lightfoot","orcid":"https://orcid.org/0000-0002-5725-4381"},"institutions":[{"id":"https://openalex.org/I110378019","display_name":"Southern Illinois University Carbondale","ror":"https://ror.org/049kefs16","country_code":"US","type":"education","lineage":["https://openalex.org/I110378019","https://openalex.org/I2801502357"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David A. Lightfoot","raw_affiliation_strings":["Department Plant, Soil Sciences, and Agriculture System, Southern Illinois University at Carbondale, Carbondale, IL 62901; Department of Plant Biology, Southern Illinois University at Carbondale, IL 62901. ga4082@siu.edu","Department Plant, Soil Sciences, and Agriculture System, Southern Illinois University at Carbondale, Carbondale, IL 62901"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Plant, Soil Sciences, and Agriculture System, Southern Illinois University at Carbondale, Carbondale, IL 62901; Department of Plant Biology, Southern Illinois University at Carbondale, IL 62901. ga4082@siu.edu","institution_ids":["https://openalex.org/I110378019"]},{"raw_affiliation_string":"Department Plant, Soil Sciences, and Agriculture System, Southern Illinois University at Carbondale, Carbondale, IL 62901","institution_ids":["https://openalex.org/I110378019"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.13246518,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"405","issue":null,"first_page":"585","last_page":"592"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.7882035970687866},{"id":"https://openalex.org/keywords/fusarium-solani","display_name":"Fusarium solani","score":0.7349398136138916},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6926862001419067},{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.6831802725791931},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6677793264389038},{"id":"https://openalex.org/keywords/fusarium","display_name":"Fusarium","score":0.6604622006416321},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.5968028903007507},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.5619635581970215},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.47237876057624817},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.4449543058872223},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.44250309467315674},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4418301284313202},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4031411409378052},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.34330347180366516}],"concepts":[{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.7882035970687866},{"id":"https://openalex.org/C2778342517","wikidata":"https://www.wikidata.org/wiki/Q5509914","display_name":"Fusarium solani","level":2,"score":0.7349398136138916},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6926862001419067},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.6831802725791931},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6677793264389038},{"id":"https://openalex.org/C2778867309","wikidata":"https://www.wikidata.org/wiki/Q131672","display_name":"Fusarium","level":2,"score":0.6604622006416321},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.5968028903007507},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.5619635581970215},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.47237876057624817},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.4449543058872223},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.44250309467315674},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4418301284313202},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4031411409378052},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.34330347180366516},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2007.4375620","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375620","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},{"id":"pmh:oai:opensiuc.lib.siu.edu:cs_pubs-1007","is_oa":false,"landing_page_url":"https://opensiuc.lib.siu.edu/cs_pubs/8","pdf_url":null,"source":{"id":"https://openalex.org/S4377196411","display_name":"OpenSIUC (Southern Illinois University Carbondale)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I110378019","host_organization_name":"Southern Illinois University Carbondale","host_organization_lineage":["https://openalex.org/I110378019"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publications","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1552506623","https://openalex.org/W1834280376","https://openalex.org/W1925391342","https://openalex.org/W1966794959","https://openalex.org/W2013561623","https://openalex.org/W2024556021","https://openalex.org/W2031101206","https://openalex.org/W2044234033","https://openalex.org/W2052929422","https://openalex.org/W2054396899","https://openalex.org/W2064744932","https://openalex.org/W2094442337","https://openalex.org/W2096144184","https://openalex.org/W2097382368","https://openalex.org/W2098841380","https://openalex.org/W2104567831","https://openalex.org/W2105813099","https://openalex.org/W2106882534","https://openalex.org/W2110637352","https://openalex.org/W2130684538","https://openalex.org/W2144050547","https://openalex.org/W2145286346","https://openalex.org/W2146396346","https://openalex.org/W2147758661","https://openalex.org/W2153522847","https://openalex.org/W2156246479","https://openalex.org/W2326373282","https://openalex.org/W2443806345"],"related_works":["https://openalex.org/W4213332005","https://openalex.org/W2255348132","https://openalex.org/W2072399678","https://openalex.org/W2365894170","https://openalex.org/W2041540252","https://openalex.org/W3207401204","https://openalex.org/W170658859","https://openalex.org/W1483316219","https://openalex.org/W4310366902","https://openalex.org/W3023720143"],"abstract_inverted_index":{"In":[0,98],"this":[1,145],"study,":[2],"we":[3],"reported":[4],"the":[5,18,36,64,95,100,103,125,129,151],"analysis":[6,33],"of":[7,14,53,85,102,113,119,128,144],"Arabidopsis":[8],"thaliana":[9],"microarray":[10,32],"gene":[11],"expression":[12],"profile":[13],"root":[15,65],"tissues":[16],"after":[17],"plant":[19],"was":[20,106,122,133],"challenged":[21],"with":[22,73],"fungal":[23],"pathogen":[24,96],"Fusarium":[25],"solani":[26],"f.":[27],"sp.":[28],"glycines":[29],"(Fsg).":[30],"Our":[31],"showed":[34],"that":[35,112],"infection":[37],"caused":[38],"130":[39,54],"transcript":[40],"abundances":[41],"(TAs)":[42],"to":[43,94,136,149,154],"increase":[44],"by":[45,58,78],"more":[46,59,79,89,110],"than":[47,60,80,90,111],"2":[48,81],"fold":[49,62,82,92],"and":[50,83,124],"32":[51],"out":[52],"TAs":[55,77],"were":[56,71],"increased":[57],"3":[61,91],"in":[63,76,140],"tissues.":[66],"However,":[67],"only":[68],"nineteen":[69],"ESTs":[70],"observed":[72],"a":[74],"decrease":[75],"13":[84],"them":[86],"went":[87],"down":[88],"due":[93],"infection.":[97],"addition,":[99],"number":[101],"up-regulated":[104],"genes":[105,121,132],"nearly":[107],"seven":[108],"times":[109],"downregulated":[114],"genes.":[115],"The":[116,142],"coordinate":[117],"regulation":[118],"adjacent":[120],"detected":[123],"distance":[126],"distribution":[127],"nearest":[130],"neighbor":[131],"less":[134],"likely":[135],"be":[137],"randomly":[138],"scattered":[139],"genome.":[141],"results":[143],"study":[146],"enabled":[147],"us":[148],"decipher":[150],"resistance":[152],"mechanism":[153],"Fsg":[155],"through":[156],"an":[157],"integrated":[158],"computational":[159],"approach.":[160]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
