{"id":"https://openalex.org/W1999194177","doi":"https://doi.org/10.1109/bibe.2007.4375601","title":"A Machine Learning Approach to Pharmacological Profiling of the Quinone Scaffold in the NCI Database: A Compound Class Enriched in Those Effective Against Melanoma and Leukemia Cell Lines","display_name":"A Machine Learning Approach to Pharmacological Profiling of the Quinone Scaffold in the NCI Database: A Compound Class Enriched in Those Effective Against Melanoma and Leukemia Cell Lines","publication_year":2007,"publication_date":"2007-10-01","ids":{"openalex":"https://openalex.org/W1999194177","doi":"https://doi.org/10.1109/bibe.2007.4375601","mag":"1999194177"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2007.4375601","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375601","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074637081","display_name":"M. L. Ujwal","orcid":null},"institutions":[{"id":"https://openalex.org/I168537998","display_name":"Eli Lilly (United States)","ror":"https://ror.org/01qat3289","country_code":"US","type":"company","lineage":["https://openalex.org/I168537998"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"ML Ujwal","raw_affiliation_strings":["Discovery Informatics, Eli Lilly and Company, Indianapolis, IN, USA","ELI LILLY AND CO., INDIANAPOLIS"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Discovery Informatics, Eli Lilly and Company, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I168537998"]},{"raw_affiliation_string":"ELI LILLY AND CO., INDIANAPOLIS","institution_ids":["https://openalex.org/I168537998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085505710","display_name":"Patrick Hoffman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Patrick Hoffman","raw_affiliation_strings":["Inform Sense, Cambridge, MA, USA","InforSense, Cambridge, MA 02141"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Inform Sense, Cambridge, MA, USA","institution_ids":[]},{"raw_affiliation_string":"InforSense, Cambridge, MA 02141","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113740075","display_name":"Kenneth A. Marx","orcid":null},"institutions":[{"id":"https://openalex.org/I133738476","display_name":"University of Massachusetts Lowell","ror":"https://ror.org/03hamhx47","country_code":"US","type":"education","lineage":["https://openalex.org/I133738476"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth A. Marx","raw_affiliation_strings":["Department of Chemistry, University of Massachusetts, Lowell, Lowell, MA, USA","Department of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854. E-mail: Kenneth_marx@uml.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry, University of Massachusetts, Lowell, Lowell, MA, USA","institution_ids":["https://openalex.org/I133738476"]},{"raw_affiliation_string":"Department of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854. E-mail: Kenneth_marx@uml.edu","institution_ids":["https://openalex.org/I133738476"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.1224,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.77495084,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"378 a and 382 b","issue":null,"first_page":"456","last_page":"463"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10274","display_name":"Synthesis and biological activity","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1605","display_name":"Organic Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/melanoma","display_name":"Melanoma","score":0.6039799451828003},{"id":"https://openalex.org/keywords/cancer-cell-lines","display_name":"Cancer cell lines","score":0.594287097454071},{"id":"https://openalex.org/keywords/quinone","display_name":"Quinone","score":0.5048487782478333},{"id":"https://openalex.org/keywords/cell-culture","display_name":"Cell culture","score":0.4953857660293579},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47148510813713074},{"id":"https://openalex.org/keywords/leukemia","display_name":"Leukemia","score":0.43360576033592224},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.4286014437675476},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4068792462348938},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3960902988910675},{"id":"https://openalex.org/keywords/cancer-cell","display_name":"Cancer cell","score":0.37611880898475647},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33122557401657104},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.24677470326423645},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.13278448581695557},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11801129579544067}],"concepts":[{"id":"https://openalex.org/C2777658100","wikidata":"https://www.wikidata.org/wiki/Q180614","display_name":"Melanoma","level":2,"score":0.6039799451828003},{"id":"https://openalex.org/C2994372470","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell lines","level":4,"score":0.594287097454071},{"id":"https://openalex.org/C2780643102","wikidata":"https://www.wikidata.org/wiki/Q412382","display_name":"Quinone","level":2,"score":0.5048487782478333},{"id":"https://openalex.org/C81885089","wikidata":"https://www.wikidata.org/wiki/Q189082","display_name":"Cell culture","level":2,"score":0.4953857660293579},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47148510813713074},{"id":"https://openalex.org/C2778461978","wikidata":"https://www.wikidata.org/wiki/Q29496","display_name":"Leukemia","level":2,"score":0.43360576033592224},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.4286014437675476},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4068792462348938},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3960902988910675},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.37611880898475647},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33122557401657104},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.24677470326423645},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.13278448581695557},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11801129579544067}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2007.4375601","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2007.4375601","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE 7th International Symposium on BioInformatics and BioEngineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5699999928474426}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W648334679","https://openalex.org/W1965187929","https://openalex.org/W1976965090","https://openalex.org/W1989076816","https://openalex.org/W2006944463","https://openalex.org/W2018843280","https://openalex.org/W2071362065","https://openalex.org/W2122128696","https://openalex.org/W2167395325","https://openalex.org/W2200701965","https://openalex.org/W6621231181"],"related_works":["https://openalex.org/W1499056254","https://openalex.org/W2953219586","https://openalex.org/W4244178463","https://openalex.org/W2767150574","https://openalex.org/W1991879524","https://openalex.org/W2000915804","https://openalex.org/W2058997294","https://openalex.org/W4211259059","https://openalex.org/W2171435634","https://openalex.org/W2384201665"],"abstract_inverted_index":{"We":[0],"have":[1],"carried":[2],"out":[3],"supervised":[4],"machine":[5],"learning":[6],"on":[7,30],"a":[8],"subset":[9],"(8741":[10],"compounds)":[11],"of":[12,64,79],"the":[13,45,55],"public":[14],"NCI":[15,47],"cancer":[16,24,48,75],"compound":[17,49,81],"library":[18],"screened":[19],"for":[20],"effectiveness":[21],"against":[22,70],"60":[23],"cell":[25,56,76],"lines.":[26],"Our":[27],"focus":[28],"was":[29],"identifying":[31],"quinone":[32,86],"compounds":[33,65],"and":[34],"we":[35],"found":[36],"these":[37,80],"to":[38,44],"be":[39],"over":[40],"four-fold":[41],"enriched":[42,84],"compared":[43],"entire":[46],"library.":[50],"Two-class":[51],"classifications":[52],"based":[53],"upon":[54],"types'":[57],"tumor":[58],"tissue":[59],"origin":[60],"classes,":[61],"identified":[62],"subsets":[63,82],"that":[66],"were":[67,83],"most":[68],"effective":[69],"either":[71],"melanoma":[72],"or":[73],"leukemia":[74],"types.":[77],"Both":[78],"in":[85],"compounds.":[87]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
