{"id":"https://openalex.org/W2099866660","doi":"https://doi.org/10.1109/bibe.2004.1317393","title":"Discovering novel interacting motif pairs from large protein-protein interaction datasets","display_name":"Discovering novel interacting motif pairs from large protein-protein interaction datasets","publication_year":2004,"publication_date":"2004-09-28","ids":{"openalex":"https://openalex.org/W2099866660","doi":"https://doi.org/10.1109/bibe.2004.1317393","mag":"2099866660"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2004.1317393","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317393","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051693291","display_name":"Chris Soon Heng Tan","orcid":"https://orcid.org/0000-0002-8172-5235"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Soon-Heng Tan","raw_affiliation_strings":["Institute for Infocomm Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, Singapore","institution_ids":["https://openalex.org/I3005327000"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012563463","display_name":"Wing\u2010Kin Sung","orcid":"https://orcid.org/0000-0001-7806-7086"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Win-Kin Sung","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090171111","display_name":"See-Kiong Ng","orcid":"https://orcid.org/0000-0001-6565-7511"},"institutions":[{"id":"https://openalex.org/I3005327000","display_name":"Institute for Infocomm Research","ror":"https://ror.org/053rfa017","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I3005327000","https://openalex.org/I91275662"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"See-Kiong Ng","raw_affiliation_strings":["Institute for Infocomm Research, Singapore"],"affiliations":[{"raw_affiliation_string":"Institute for Infocomm Research, Singapore","institution_ids":["https://openalex.org/I3005327000"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5051693291"],"corresponding_institution_ids":["https://openalex.org/I3005327000"],"apc_list":null,"apc_paid":null,"fwci":0.3618,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.5904679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"403","issue":null,"first_page":"568","last_page":"575"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9778000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.8114783763885498},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6364625692367554},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.5657713413238525},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.5266437530517578},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5040756464004517},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4854155480861664},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4249677062034607},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34799960255622864},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25020188093185425},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20392975211143494},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.166806161403656},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11699140071868896},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11491629481315613}],"concepts":[{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.8114783763885498},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6364625692367554},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.5657713413238525},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.5266437530517578},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5040756464004517},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4854155480861664},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4249677062034607},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34799960255622864},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25020188093185425},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20392975211143494},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.166806161403656},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11699140071868896},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11491629481315613},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibe.2004.1317393","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317393","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/40892","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/40892","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Conference Paper"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.127.6352","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.127.6352","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.iscs.nus.edu.sg/~hugowill/MyProjects/BIBE_MotifPairv2c.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1530370735","https://openalex.org/W1588911128","https://openalex.org/W1780900583","https://openalex.org/W2037036397","https://openalex.org/W2045131140","https://openalex.org/W2061439657","https://openalex.org/W2065304353","https://openalex.org/W2080922074","https://openalex.org/W2084619201","https://openalex.org/W2099235960","https://openalex.org/W2107424557","https://openalex.org/W2107811186","https://openalex.org/W2109715166","https://openalex.org/W2113163719","https://openalex.org/W2113654464","https://openalex.org/W2117249420","https://openalex.org/W2131516248","https://openalex.org/W2141885858","https://openalex.org/W2144231753","https://openalex.org/W2155480785","https://openalex.org/W2166233246","https://openalex.org/W2167869241","https://openalex.org/W4210400672","https://openalex.org/W6631694636"],"related_works":["https://openalex.org/W2073661767","https://openalex.org/W2380185347","https://openalex.org/W2368410102","https://openalex.org/W2044328609","https://openalex.org/W2370034659","https://openalex.org/W3021477453","https://openalex.org/W3113308218","https://openalex.org/W2012993128","https://openalex.org/W2159636084","https://openalex.org/W2610941444"],"abstract_inverted_index":{"Current":[0],"motif":[1,20,30,73,87,103,120],"discovery":[2,39],"methods":[3],"can":[4,32,66],"only":[5],"detect":[6],"individual":[7],"motifs":[8,133],"in":[9,60,139,147],"groups":[10],"of":[11,40,51,92,109,126,131],"protein":[12,63,127,140],"sequence":[13],"-":[14],"they":[15],"do":[16],"not":[17],"discover":[18,70,84,119],"potentially-interacting":[19],"pairs":[21,31,88,104,121],"underlying":[22],"the":[23,26,36,61,132,148],"interactions":[24],"between":[25],"proteins.":[27,113],"Such":[28],"interacting":[29,72,86,102,111],"be":[33,67],"useful":[34],"for":[35],"design":[37],"and":[38],"new":[41],"drugs.":[42],"Recent":[43],"technological":[44],"advances":[45],"have":[46],"made":[47],"available":[48],"large":[49,90,107],"datasets":[50,91],"experimentally-detected":[52],"protein-protein":[53,93],"interactions.":[54,94],"The":[55],"functionally-induced":[56],"co-occurring":[57],"patterns":[58],"inherent":[59],"pairwise":[62],"interaction":[64],"data":[65],"exploited":[68],"to":[69,83,118,135],"novel":[71,85,101],"pairs.":[74],"In":[75],"this":[76],"work,":[77],"we":[78,98],"present":[79],"an":[80],"automated":[81],"method":[82,115],"from":[89,105],"Using":[95],"our":[96],"method,":[97],"discovered":[99],"9,045":[100],"a":[106],"dataset":[108],"78,390":[110],"yeast":[112],"Our":[114],"was":[116],"able":[117],"that":[122],"are":[123],"highly":[124],"deterministic":[125],"interaction,":[128],"with":[129],"many":[130],"corresponding":[134],"structural":[136],"contact":[137],"sites":[138,145],"complexes,":[141],"or":[142],"experimentally-determined":[143],"binding":[144],"reported":[146],"literature.":[149]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
