{"id":"https://openalex.org/W1846879251","doi":"https://doi.org/10.1109/bibe.2004.1317390","title":"A mutation-sensitive approach for locating conserved gene pairs between related species","display_name":"A mutation-sensitive approach for locating conserved gene pairs between related species","publication_year":2004,"publication_date":"2004-09-28","ids":{"openalex":"https://openalex.org/W1846879251","doi":"https://doi.org/10.1109/bibe.2004.1317390","mag":"1846879251"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2004.1317390","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317390","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113616487","display_name":"H. L. Chan","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"H.L. Chan","raw_affiliation_strings":["Department of Computer Science, University of Hong Kong, Hong Kong, China","Dept. of Comput. Sci., Hong Kong Univ., China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Hong Kong Univ., China","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077116003","display_name":"Tak\u2010Wah Lam","orcid":"https://orcid.org/0000-0003-4676-8587"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"T.W. Lam","raw_affiliation_strings":["Department of Computer Science, University of Hong Kong, Hong Kong, China","Dept. of Comput. Sci., Hong Kong Univ., China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Hong Kong Univ., China","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012563463","display_name":"Wing\u2010Kin Sung","orcid":"https://orcid.org/0000-0001-7806-7086"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"W.K. Sung","raw_affiliation_strings":["Department of Computer Science, National University of Singapore, Singapore","Department of Computer Science, National University of Singapore, Singapore,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"Department of Computer Science, National University of Singapore, Singapore,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063692696","display_name":"Prudence W. H. Wong","orcid":"https://orcid.org/0000-0001-7935-7245"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"P.W.H. Wong","raw_affiliation_strings":["Department of Computer Science, University of Hong Kong, Hong Kong, China","Department of Computer Science,  University of Hong Kong, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Computer Science,  University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110500992","display_name":"Siu\u2010Ming Yiu","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"S.M. Yiu","raw_affiliation_strings":["Department of Computer Science, University of Hong Kong, Hong Kong, China","Department of Computer Science,  University of Hong Kong, Hong Kong, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Computer Science,  University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5113616487"],"corresponding_institution_ids":["https://openalex.org/I141568987","https://openalex.org/I889458895"],"apc_list":null,"apc_paid":null,"fwci":0.3605,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.63773233,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"tr 170","issue":null,"first_page":"545","last_page":"552"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.5884534120559692},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5349610447883606},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5039145350456238},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.484944611787796},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4825934171676636},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4814709722995758},{"id":"https://openalex.org/keywords/gene-selection","display_name":"Gene selection","score":0.4769236743450165},{"id":"https://openalex.org/keywords/optimization-problem","display_name":"Optimization problem","score":0.43192344903945923},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38381022214889526},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.346762478351593},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30066579580307007},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2408190667629242}],"concepts":[{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.5884534120559692},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5349610447883606},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5039145350456238},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.484944611787796},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4825934171676636},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4814709722995758},{"id":"https://openalex.org/C2984324147","wikidata":"https://www.wikidata.org/wiki/Q3080021","display_name":"Gene selection","level":5,"score":0.4769236743450165},{"id":"https://openalex.org/C137836250","wikidata":"https://www.wikidata.org/wiki/Q984063","display_name":"Optimization problem","level":2,"score":0.43192344903945923},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38381022214889526},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.346762478351593},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30066579580307007},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2408190667629242},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibe.2004.1317390","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317390","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/40035","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/40035","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Conference Paper"},{"id":"pmh:oai:hub.hku.hk:10722/151912","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/151912","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference_Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.550000011920929,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1490430289","https://openalex.org/W1964918240","https://openalex.org/W1988577833","https://openalex.org/W1989978323","https://openalex.org/W1993361911","https://openalex.org/W1998365429","https://openalex.org/W2003554135","https://openalex.org/W2011039300","https://openalex.org/W2012010763","https://openalex.org/W2016683587","https://openalex.org/W2023749136","https://openalex.org/W2063822318","https://openalex.org/W2070642495","https://openalex.org/W2095685450","https://openalex.org/W2152331922","https://openalex.org/W2157622572","https://openalex.org/W2476096155"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W4205762803","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W1570056848","https://openalex.org/W4313016600","https://openalex.org/W1533508595","https://openalex.org/W4246140247"],"abstract_inverted_index":{"This":[0],"paper":[1,118],"proposes":[2],"a":[3,18,38,121],"new":[4,19],"approach":[5,14],"for":[6,41],"solving":[7],"the":[8,24,48,77,86,124,128],"whole":[9],"genome":[10],"alignment":[11],"problem.":[12,131],"Our":[13],"is":[15,64,113],"based":[16],"on":[17,105,123],"structural":[20],"optimization":[21,43],"problem":[22,44],"(called":[23],"MUM":[25,129],"selection":[26,130],"problem)":[27],"related":[28],"to":[29,90],"mutations":[30],"via":[31],"reversals":[32],"and":[33,45,55,67,94,101],"transpositions.":[34],"We":[35],"have":[36,46,82],"devised":[37],"practical":[39],"algorithm":[40,49,63,72,98,112],"this":[42],"evaluated":[47],"using":[50],"15":[51],"pairs":[52,80],"of":[53,76,110,127],"human":[54],"mouse":[56],"chromosomes.":[57],"The":[58,108,117],"results":[59],"show":[60],"that":[61,81],"our":[62,71,97,111],"both":[65],"effective":[66],"efficient.":[68],"More":[69],"specifically,":[70],"can":[73],"reveal":[74],"91%":[75],"conserved":[78],"gene":[79],"been":[83],"reported":[84],"in":[85],"literature.":[87],"When":[88],"compared":[89],"existing":[91],"software":[92],"MUMmer":[93],"MaxMinCluster":[95],",":[96],"uncovers":[99],"15%":[100],"7%":[102],"more":[103],"genes":[104],"average,":[106],"respectively.":[107],"sensitivity":[109],"also":[114],"slightly":[115],"higher.":[116],"concludes":[119],"with":[120],"remark":[122],"computational":[125],"hardness":[126]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
