{"id":"https://openalex.org/W2121236758","doi":"https://doi.org/10.1109/bibe.2004.1317387","title":"A fast protein structure retrieval system using image-based distance matrices and multidimensional index","display_name":"A fast protein structure retrieval system using image-based distance matrices and multidimensional index","publication_year":2004,"publication_date":"2004-11-30","ids":{"openalex":"https://openalex.org/W2121236758","doi":"https://doi.org/10.1109/bibe.2004.1317387","mag":"2121236758"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2004.1317387","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317387","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057508937","display_name":"Pin-Hao Chi","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pin-Hao Chi","raw_affiliation_strings":["Medical and Biological Digital Library Research Lab, Department of Computer Science, University of Missouri, Columbia, MO, USA","Dept. of Comput. Sci., Missouri Univ., Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical and Biological Digital Library Research Lab, Department of Computer Science, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Missouri Univ., Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051712346","display_name":"Grant J. Scott","orcid":"https://orcid.org/0000-0001-5870-9387"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Scott","raw_affiliation_strings":["Medical and Biological Digital Library Research Lab, Department of Computer Science, University of Missouri, Columbia, MO, USA","Dept. of Comput. Sci., Missouri Univ., Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical and Biological Digital Library Research Lab, Department of Computer Science, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Missouri Univ., Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013031415","display_name":"Chi\u2010Ren Shyu","orcid":"https://orcid.org/0000-0001-9197-9522"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chi-Ren Shyu","raw_affiliation_strings":["Medical and Biological Digital Library Research Lab, Department of Computer Science, University of Missouri, Columbia, MO, USA","Dept. of Comput. Sci., Missouri Univ., Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical and Biological Digital Library Research Lab, Department of Computer Science, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Missouri Univ., Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I76835614"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"smc 9","issue":null,"first_page":"522","last_page":"529"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10627","display_name":"Advanced Image and Video Retrieval Techniques","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9760000109672546,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.7993779182434082},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6999524831771851},{"id":"https://openalex.org/keywords/distance-matrix","display_name":"Distance matrix","score":0.6740138530731201},{"id":"https://openalex.org/keywords/distance-matrices-in-phylogeny","display_name":"Distance matrices in phylogeny","score":0.4944307804107666},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4857097566127777},{"id":"https://openalex.org/keywords/database-index","display_name":"Database index","score":0.4832104444503784},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.472003698348999},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.43364274501800537},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.41743823885917664},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.41732946038246155},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3500930070877075},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.22820252180099487},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.22707191109657288},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.186955064535141}],"concepts":[{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.7993779182434082},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6999524831771851},{"id":"https://openalex.org/C111208986","wikidata":"https://www.wikidata.org/wiki/Q901698","display_name":"Distance matrix","level":2,"score":0.6740138530731201},{"id":"https://openalex.org/C5349765","wikidata":"https://www.wikidata.org/wiki/Q5282866","display_name":"Distance matrices in phylogeny","level":2,"score":0.4944307804107666},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4857097566127777},{"id":"https://openalex.org/C59276292","wikidata":"https://www.wikidata.org/wiki/Q580427","display_name":"Database index","level":3,"score":0.4832104444503784},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.472003698348999},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.43364274501800537},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.41743823885917664},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.41732946038246155},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3500930070877075},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.22820252180099487},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.22707191109657288},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.186955064535141},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2004.1317387","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317387","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1539841369","https://openalex.org/W1622620102","https://openalex.org/W1660390307","https://openalex.org/W1989447327","https://openalex.org/W2022058405","https://openalex.org/W2036106789","https://openalex.org/W2044465660","https://openalex.org/W2053281575","https://openalex.org/W2074231493","https://openalex.org/W2079992621","https://openalex.org/W2085277871","https://openalex.org/W2087064593","https://openalex.org/W2099698841","https://openalex.org/W2106453718","https://openalex.org/W2120688485","https://openalex.org/W2128241223","https://openalex.org/W2130660124","https://openalex.org/W2133059825","https://openalex.org/W2140239209","https://openalex.org/W2151457740","https://openalex.org/W2152024417","https://openalex.org/W2152326664","https://openalex.org/W2161773631","https://openalex.org/W2167120101","https://openalex.org/W4242602028"],"related_works":["https://openalex.org/W2001076853","https://openalex.org/W1872375678","https://openalex.org/W4387171312","https://openalex.org/W4388316203","https://openalex.org/W4206923957","https://openalex.org/W2952169863","https://openalex.org/W1605858995","https://openalex.org/W4235784610","https://openalex.org/W1753959406","https://openalex.org/W2090844285"],"abstract_inverted_index":{"Indexing":[0],"protein":[1,16,69,78,132,167],"structures":[2],"has":[3],"been":[4],"shown":[5],"to":[6,53,109,143,157],"provide":[7],"a":[8,29,115,128,162,172],"scalable":[9],"solution":[10],"for":[11],"structure-to-structure":[12],"comparisons":[13],"in":[14,28,59,138,148,161,169],"large":[15],"structure":[17],"retrieval":[18],"systems.":[19],"To":[20],"conduct":[21],"similarity":[22],"searches":[23],"against":[24],"46,075":[25],"polypeptide":[26],"chains":[27],"database":[30,168],"with":[31],"real-time":[32],"responses,":[33],"two":[34],"critical":[35],"issues":[36],"must":[37],"be":[38,107],"addressed,":[39],"information":[40,57],"extraction":[41],"and":[42,81],"suitable":[43],"indexing.":[44],"In":[45],"this":[46],"paper,":[47],"we":[48,134],"apply":[49,135],"computer":[50],"vision":[51],"techniques":[52,137],"extract":[54],"the":[55,111,139,149,166],"predominant":[56],"encoded":[58],"each":[60],"2D":[61],"distance":[62,94],"matrix,":[63],"generated":[64],"from":[65,93,121,165],"3D":[66],"coordinates":[67],"of":[68,75,118,127,130,146,176],"chains.":[70],"Distance":[71],"matrices":[72],"are":[73,91],"capable":[74],"representing":[76],"specific":[77],"structural":[79,125],"topologies,":[80],"similar":[82,86],"proteins":[83,147],"will":[84],"generate":[85],"matrices.":[87],"Once":[88],"meaningful":[89],"features":[90],"extracted":[92],"images,":[95],"an":[96],"advanced":[97],"indexing":[98],"structure,":[99],"entropy":[100],"balanced":[101],"statistical":[102],"(EBS)":[103],"k-d":[104],"tree,":[105],"can":[106],"utilized":[108],"index":[110],"multidimensional":[112],"data.":[113],"With":[114],"limited":[116],"amount":[117],"training":[119],"data":[120],"domain":[122],"experts,":[123],"namely":[124],"classification":[126],"subset":[129],"available":[131],"chains,":[133],"various":[136],"pattern":[140],"recognition":[141],"field":[142],"determine":[144],"clusters":[145],"multi-dimensional":[150],"feature":[151],"space.":[152],"Our":[153],"system":[154],"is":[155],"able":[156],"recall":[158],"search":[159],"results":[160],"ranked":[163],"order":[164],"seconds,":[170],"exhibiting":[171],"reasonably":[173],"high":[174],"degree":[175],"precision.":[177]},"counts_by_year":[{"year":2020,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
