{"id":"https://openalex.org/W2154736284","doi":"https://doi.org/10.1109/bibe.2004.1317381","title":"Constraint based method for finding motifs in DNA sequences","display_name":"Constraint based method for finding motifs in DNA sequences","publication_year":2004,"publication_date":"2004-11-30","ids":{"openalex":"https://openalex.org/W2154736284","doi":"https://doi.org/10.1109/bibe.2004.1317381","mag":"2154736284"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2004.1317381","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317381","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110259505","display_name":"Xiaoan Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Xiaoan Dong","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113588307","display_name":"Sam Yuan Sung","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Sam Yuan Sung","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012563463","display_name":"Wing\u2010Kin Sung","orcid":"https://orcid.org/0000-0001-7806-7086"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wing-Kin Sung","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111664929","display_name":"Chew Lim Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chew Lim Tan","raw_affiliation_strings":["School of Computing, National University of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5110259505"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":null,"apc_paid":null,"fwci":0.9243,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.82401238,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"12","issue":null,"first_page":"483","last_page":"490"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.8740555047988892},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.7299990057945251},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6411856412887573},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.477413535118103},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.47189199924468994},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.42702963948249817},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3666701316833496},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23821482062339783}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.8740555047988892},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.7299990057945251},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6411856412887573},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.477413535118103},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.47189199924468994},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.42702963948249817},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3666701316833496},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23821482062339783},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2004.1317381","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317381","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/40079","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/40079","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1553002612","https://openalex.org/W1580213736","https://openalex.org/W1975924111","https://openalex.org/W1983921490","https://openalex.org/W1998300401","https://openalex.org/W1999890519","https://openalex.org/W2003967338","https://openalex.org/W2009566340","https://openalex.org/W2020133533","https://openalex.org/W2028904582","https://openalex.org/W2032231928","https://openalex.org/W2035588418","https://openalex.org/W2048869777","https://openalex.org/W2056002855","https://openalex.org/W2057368087","https://openalex.org/W2065718231","https://openalex.org/W2085239230","https://openalex.org/W2130415678","https://openalex.org/W2151864878","https://openalex.org/W2152893838","https://openalex.org/W2153800196","https://openalex.org/W2155976638","https://openalex.org/W2159588654","https://openalex.org/W2165156013","https://openalex.org/W6633419661","https://openalex.org/W6634719314","https://openalex.org/W6682603391"],"related_works":["https://openalex.org/W1583922594","https://openalex.org/W1542422837","https://openalex.org/W1974038726","https://openalex.org/W2998448420","https://openalex.org/W1598224733","https://openalex.org/W4280502676","https://openalex.org/W2000769876","https://openalex.org/W2112822946","https://openalex.org/W204227468","https://openalex.org/W1953626159"],"abstract_inverted_index":{"This":[0],"paper":[1],"introduces":[2],"a":[3],"novel":[4],"motif":[5],"discovery":[6],"algorithm":[7,98],"based":[8],"on":[9],"the":[10,29,50,61,67,71,94,97,100,103,112],"use":[11,87],"of":[12,25,28,55,102,106,114],"constraint":[13,16,39,42],"mechanism":[14,40],"and":[15],"rules.":[17,43],"The":[18,44],"key":[19],"idea":[20],"is":[21,76],"to":[22,91],"convert":[23],"sets":[24],"similar":[26],"substrings":[27],"DNA":[30],"sequences":[31],"into":[32],"patterns,":[33],"as":[34,36,84,109,111],"early":[35],"possible,":[37],"using":[38],"or":[41],"advantages":[45,101],"are":[46,64],"two":[47],"folds.":[48],"Firstly,":[49],"approach":[51],"generates":[52],"limited":[53],"number":[54],"patterns":[56,75],"while":[57],"still":[58],"guaranteeing":[59],"that":[60,85],"actual":[62],"motifs":[63],"contained":[65],"in":[66],"pattern":[68],"set.":[69],"Secondly,":[70],"procedure":[72],"for":[73],"deriving":[74],"very":[77],"cost-effective":[78],"since":[79],"it":[80],"can":[81],"be":[82],"considered":[83],"we":[86],"many":[88],"\"look":[89],"ahead\"":[90],"speed":[92],"up":[93],"procedure.":[95],"Therefore,":[96],"has":[99],"high":[104],"sensitivity":[105],"pattern-driven":[107],"algorithms":[108],"well":[110],"efficiency":[113],"sample-driven":[115],"algorithms.":[116]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
