{"id":"https://openalex.org/W2150687538","doi":"https://doi.org/10.1109/bibe.2004.1317367","title":"A time series analysis of microarray data","display_name":"A time series analysis of microarray data","publication_year":2004,"publication_date":"2004-11-30","ids":{"openalex":"https://openalex.org/W2150687538","doi":"https://doi.org/10.1109/bibe.2004.1317367","mag":"2150687538"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2004.1317367","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317367","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110031948","display_name":"Selnur Erdal","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]},{"id":"https://openalex.org/I1314135232","display_name":"Nationwide Children's Hospital","ror":"https://ror.org/003rfsp33","country_code":"US","type":"funder","lineage":["https://openalex.org/I1314135232"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"S. Erdal","raw_affiliation_strings":["Columbus Childrens Hospital Research Institute, Columbus, OH, USA","Department of Pediatrics, College of Medicine, Ohio State Uinversity, USA"],"affiliations":[{"raw_affiliation_string":"Columbus Childrens Hospital Research Institute, Columbus, OH, USA","institution_ids":["https://openalex.org/I1314135232"]},{"raw_affiliation_string":"Department of Pediatrics, College of Medicine, Ohio State Uinversity, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102900844","display_name":"\u00d6zg\u00fcr \u00d6zt\u00fcrk","orcid":"https://orcid.org/0000-0003-2605-4587"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"O. Ozturk","raw_affiliation_strings":["Department of Computer Science and Engineering, Ohio State Uinversity, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Ohio State Uinversity, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074921816","display_name":"David W. Armbruster","orcid":null},"institutions":[{"id":"https://openalex.org/I1314135232","display_name":"Nationwide Children's Hospital","ror":"https://ror.org/003rfsp33","country_code":"US","type":"funder","lineage":["https://openalex.org/I1314135232"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Armbruster","raw_affiliation_strings":["Columbus Childrens Hospital Research Institute, Columbus, OH, USA","Department of Pediatrics, College of Medicine, Ohio State Uinversity, USA"],"affiliations":[{"raw_affiliation_string":"Columbus Childrens Hospital Research Institute, Columbus, OH, USA","institution_ids":["https://openalex.org/I1314135232"]},{"raw_affiliation_string":"Department of Pediatrics, College of Medicine, Ohio State Uinversity, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078571347","display_name":"Hakan Ferhatosmano\u011flu","orcid":"https://orcid.org/0000-0002-5181-4712"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Ferhatosmanoglu","raw_affiliation_strings":["Department of Computer Science and Engineering, Ohio State Uinversity, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Ohio State Uinversity, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103542210","display_name":"Will C. Ray","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]},{"id":"https://openalex.org/I1314135232","display_name":"Nationwide Children's Hospital","ror":"https://ror.org/003rfsp33","country_code":"US","type":"funder","lineage":["https://openalex.org/I1314135232"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W.C. Ray","raw_affiliation_strings":["Columbus Childrens Hospital Research Institute, Columbus, OH, USA","Department of Pediatrics, College of Medicine, Ohio State Uinversity, USA"],"affiliations":[{"raw_affiliation_string":"Columbus Childrens Hospital Research Institute, Columbus, OH, USA","institution_ids":["https://openalex.org/I1314135232"]},{"raw_affiliation_string":"Department of Pediatrics, College of Medicine, Ohio State Uinversity, USA","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5110031948"],"corresponding_institution_ids":["https://openalex.org/I1314135232","https://openalex.org/I52357470"],"apc_list":null,"apc_paid":null,"fwci":1.9294,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.85325358,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"366","last_page":"375"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7267444729804993},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.643232524394989},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5262997150421143},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.5164799690246582},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4610665440559387},{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.43664222955703735},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3213730752468109},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.28790780901908875},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.26944780349731445},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19489747285842896},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1608082354068756},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08910992741584778}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7267444729804993},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.643232524394989},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5262997150421143},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.5164799690246582},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4610665440559387},{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.43664222955703735},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3213730752468109},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.28790780901908875},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.26944780349731445},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19489747285842896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1608082354068756},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08910992741584778},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibe.2004.1317367","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317367","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.3.4457","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.3.4457","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.ohio-state.edu/~hakan/publications/BIBE04.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.332.9603","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.332.9603","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.biosci.ohio-state.edu/~ray/documents/erdal_2004_bibe.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W65738273","https://openalex.org/W599362336","https://openalex.org/W1481143593","https://openalex.org/W1482321076","https://openalex.org/W1489608363","https://openalex.org/W1608072158","https://openalex.org/W1962458808","https://openalex.org/W1970156673","https://openalex.org/W1971787896","https://openalex.org/W2006783944","https://openalex.org/W2007636991","https://openalex.org/W2011133126","https://openalex.org/W2018066428","https://openalex.org/W2030958510","https://openalex.org/W2033380151","https://openalex.org/W2075203604","https://openalex.org/W2093017030","https://openalex.org/W2094883982","https://openalex.org/W2095958385","https://openalex.org/W2097413644","https://openalex.org/W2097948691","https://openalex.org/W2101005720","https://openalex.org/W2103453943","https://openalex.org/W2107383984","https://openalex.org/W2108414494","https://openalex.org/W2109248321","https://openalex.org/W2110544411","https://openalex.org/W2116811581","https://openalex.org/W2122135124","https://openalex.org/W2123760278","https://openalex.org/W2124756491","https://openalex.org/W2125495986","https://openalex.org/W2130618490","https://openalex.org/W2133210805","https://openalex.org/W2142432438","https://openalex.org/W2143629309","https://openalex.org/W2148541040","https://openalex.org/W2150926065","https://openalex.org/W2158877257","https://openalex.org/W2160234680","https://openalex.org/W2170192148","https://openalex.org/W2752885492","https://openalex.org/W2800394774","https://openalex.org/W2997000181","https://openalex.org/W3017143921","https://openalex.org/W3145128584","https://openalex.org/W4285719527","https://openalex.org/W4372046852","https://openalex.org/W6629092883","https://openalex.org/W6640958119","https://openalex.org/W6674717754"],"related_works":["https://openalex.org/W2804364458","https://openalex.org/W4298130764","https://openalex.org/W2132641928","https://openalex.org/W4310225030","https://openalex.org/W2090259340","https://openalex.org/W2083665254","https://openalex.org/W2393816671","https://openalex.org/W2158836806","https://openalex.org/W1926736923","https://openalex.org/W2942177010"],"abstract_inverted_index":{"As":[0,222],"the":[1,42,68,72,86,93,117,153,199,208,240],"capture":[2],"and":[3,25,37,76,105,113,161,166,179,237,244,254],"analysis":[4,118],"of":[5,45,61,71,111,119,142,152,181,201,207,242],"single-time-point":[6],"microarray":[7],"expression":[8,17,62,123,155],"data":[9,18,156,175,189],"becomes":[10],"routine,":[11],"investigators":[12],"are":[13,30,78,103,216,226],"turning":[14],"to":[15,19,55,190,213,228,238],"time-series":[16,46,182,188],"investigate":[20],"complex":[21],"gene":[22,122,154],"regulation":[23],"schemes":[24],"metabolic":[26],"pathways.":[27],"These":[28],"investigations":[29],"facilitated":[31],"by":[32,204,219],"algorithms":[33],"that":[34,157,176,210,233],"can":[35],"extract":[36],"cluster":[38],"related":[39],"behaviors":[40,47],"from":[41],"full":[43],"population":[44],"observed.":[48],"Although":[49],"traditional":[50],"clustering":[51,170],"techniques":[52],"have":[53,132],"shown":[54],"be":[56,191,214],"effective":[57],"for":[58,82,92,96,116,134,173],"certain":[59],"types":[60],"analysis,":[63],"they":[64],"do":[65],"not":[66,80,217],"take":[67],"biological":[69],"nature":[70],"process":[73],"into":[74,164],"account,":[75],"therefore":[77],"clearly":[79],"optimized":[81,172],"this":[83],"purpose.":[84],"Moreover,":[85],"current":[87,112,220],"approaches":[88],"provide":[89],"internal":[90],"comparisons":[91],"experiments":[94],"utilized":[95],"clustering,":[97],"but":[98],"cross-comparisons":[99],"between":[100],"clustered":[101],"results":[102],"qualitative":[104],"subjective.":[106],"We":[107,125,147,197],"present":[108],"a":[109,139,150,169,223],"combination":[110],"novel":[114],"methods":[115],"time":[120],"series":[121],"data.":[124],"focus":[126],"on":[127],"an":[128,245],"actual":[129],"study":[130],"we":[131,225],"performed":[133],"Haemophilus":[135],"influenzae":[136],"which":[137],"is":[138],"major":[140],"cause":[141],"otitis":[143],"media":[144],"in":[145],"children.":[146],"first":[148],"perform":[149],"discretization":[151],"takes":[158],"both":[159,252],"positive":[160],"negative":[162],"correlations":[163],"consideration":[165],"then":[167],"develop":[168],"algorithm":[171,203],"such":[174],"allows":[177,187],"elucidation":[178],"searching":[180],"patterns.":[183],"The":[184],"resulting":[185],"approach":[186],"usefully":[192],"compared":[193],"across":[194],"multiple":[195],"experiments.":[196],"demonstrate":[198],"success":[200],"our":[202],"showing":[205],"some":[206],"genes":[209],"it":[211],"finds":[212],"co-regulated":[215],"detected":[218],"methods.":[221],"result":[224],"able":[227],"identify":[229],"several":[230],"signal":[231],"pathways":[232],"initiate":[234],"competence":[235],"development,":[236],"characterize":[239],"transcriptomes":[241],"wild-type":[243],"adenylate":[246],"cyclase":[247],"mutant":[248],"(cya)":[249],"strains":[250],"under":[251],"nutrient-limiting":[253],"nutrient-complete":[255],"growth":[256],"conditions.":[257]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
