{"id":"https://openalex.org/W2128051373","doi":"https://doi.org/10.1109/bibe.2004.1317356","title":"The application of alternative splicing graphs in quantitative analysis of alternative splicing form from EST database","display_name":"The application of alternative splicing graphs in quantitative analysis of alternative splicing form from EST database","publication_year":2004,"publication_date":"2004-11-30","ids":{"openalex":"https://openalex.org/W2128051373","doi":"https://doi.org/10.1109/bibe.2004.1317356","mag":"2128051373"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2004.1317356","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317356","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029013737","display_name":"Hsun-Chang Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I177918364","display_name":"Providence University","ror":"https://ror.org/03fcpsq87","country_code":"TW","type":"education","lineage":["https://openalex.org/I177918364"]},{"id":"https://openalex.org/I196272386","display_name":"Providence College","ror":"https://ror.org/00rxpqe74","country_code":"US","type":"education","lineage":["https://openalex.org/I196272386"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"Hsun-Chang Chang","raw_affiliation_strings":["Department Comput. Science and Information Management, Providence University, Taiwan","Dept. of Comput. Sci. & Info. Manage., Providence Univ., Taichung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Comput. Science and Information Management, Providence University, Taiwan","institution_ids":["https://openalex.org/I177918364"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Info. Manage., Providence Univ., Taichung, Taiwan","institution_ids":["https://openalex.org/I196272386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065276444","display_name":"Po-Shun Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I177918364","display_name":"Providence University","ror":"https://ror.org/03fcpsq87","country_code":"TW","type":"education","lineage":["https://openalex.org/I177918364"]},{"id":"https://openalex.org/I196272386","display_name":"Providence College","ror":"https://ror.org/00rxpqe74","country_code":"US","type":"education","lineage":["https://openalex.org/I196272386"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"Po-Shun Yu","raw_affiliation_strings":["Department Comput. Science and Information Management, Providence University, Taiwan","Dept. of Comput. Sci. & Info. Manage., Providence Univ., Taichung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Comput. Science and Information Management, Providence University, Taiwan","institution_ids":["https://openalex.org/I177918364"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Info. Manage., Providence Univ., Taichung, Taiwan","institution_ids":["https://openalex.org/I196272386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053500377","display_name":"Tze-Wei Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I177918364","display_name":"Providence University","ror":"https://ror.org/03fcpsq87","country_code":"TW","type":"education","lineage":["https://openalex.org/I177918364"]},{"id":"https://openalex.org/I196272386","display_name":"Providence College","ror":"https://ror.org/00rxpqe74","country_code":"US","type":"education","lineage":["https://openalex.org/I196272386"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"Tze-Wei Huang","raw_affiliation_strings":["Department Comput. Science and Information Management, Providence University, Taiwan","Dept. of Comput. Sci. & Info. Manage., Providence Univ., Taichung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Comput. Science and Information Management, Providence University, Taiwan","institution_ids":["https://openalex.org/I177918364"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Info. Manage., Providence Univ., Taichung, Taiwan","institution_ids":["https://openalex.org/I196272386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039839389","display_name":"Yaw-Ling Lin","orcid":"https://orcid.org/0000-0001-8151-684X"},"institutions":[{"id":"https://openalex.org/I177918364","display_name":"Providence University","ror":"https://ror.org/03fcpsq87","country_code":"TW","type":"education","lineage":["https://openalex.org/I177918364"]},{"id":"https://openalex.org/I196272386","display_name":"Providence College","ror":"https://ror.org/00rxpqe74","country_code":"US","type":"education","lineage":["https://openalex.org/I196272386"]}],"countries":["TW","US"],"is_corresponding":false,"raw_author_name":"Yaw-Ling Lin","raw_affiliation_strings":["Department Comput. Science and Information Management, Providence University, Taiwan","Dept. of Comput. Sci. & Info. Manage., Providence Univ., Taichung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Comput. Science and Information Management, Providence University, Taiwan","institution_ids":["https://openalex.org/I177918364"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Info. Manage., Providence Univ., Taichung, Taiwan","institution_ids":["https://openalex.org/I196272386"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030877187","display_name":"Fang-Rong Hsu","orcid":"https://orcid.org/0000-0001-9791-317X"},"institutions":[{"id":"https://openalex.org/I143578492","display_name":"Asia University","ror":"https://ror.org/038a1tp19","country_code":"TW","type":"education","lineage":["https://openalex.org/I143578492"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Fang-Rong Hsu","raw_affiliation_strings":["Department Bioinformatics, Taichung Healthcare and Management University, Taiwan","[Department Bioinformatics, Taichung Healthcare and Management University, Taiwan]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department Bioinformatics, Taichung Healthcare and Management University, Taiwan","institution_ids":["https://openalex.org/I143578492"]},{"raw_affiliation_string":"[Department Bioinformatics, Taichung Healthcare and Management University, Taiwan]","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7365,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.77848912,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"59","issue":null,"first_page":"293","last_page":"300"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.7986125946044922},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.7774969339370728},{"id":"https://openalex.org/keywords/minigene","display_name":"Minigene","score":0.6533064246177673},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5773287415504456},{"id":"https://openalex.org/keywords/exonic-splicing-enhancer","display_name":"Exonic splicing enhancer","score":0.48783138394355774},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4721676707267761},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.45310917496681213},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4510931968688965},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3787548243999481},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3470139801502228},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.15242964029312134}],"concepts":[{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.7986125946044922},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.7774969339370728},{"id":"https://openalex.org/C166342232","wikidata":"https://www.wikidata.org/wiki/Q11936831","display_name":"Minigene","level":5,"score":0.6533064246177673},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5773287415504456},{"id":"https://openalex.org/C42576000","wikidata":"https://www.wikidata.org/wiki/Q5420618","display_name":"Exonic splicing enhancer","level":5,"score":0.48783138394355774},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4721676707267761},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.45310917496681213},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4510931968688965},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3787548243999481},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3470139801502228},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.15242964029312134}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2004.1317356","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317356","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W187262703","https://openalex.org/W1573984404","https://openalex.org/W1589918049","https://openalex.org/W1718484388","https://openalex.org/W1813030236","https://openalex.org/W1968164578","https://openalex.org/W1976272551","https://openalex.org/W1986891966","https://openalex.org/W1988185570","https://openalex.org/W2001914359","https://openalex.org/W2031960564","https://openalex.org/W2033310094","https://openalex.org/W2034225042","https://openalex.org/W2038617558","https://openalex.org/W2047803783","https://openalex.org/W2067501355","https://openalex.org/W2077689651","https://openalex.org/W2088536629","https://openalex.org/W2089465951","https://openalex.org/W2099570444","https://openalex.org/W2106315526","https://openalex.org/W2106647972","https://openalex.org/W2114049512","https://openalex.org/W2117328480","https://openalex.org/W2117706586","https://openalex.org/W2125973903","https://openalex.org/W2126536832","https://openalex.org/W2130368032","https://openalex.org/W2136651963","https://openalex.org/W2139455449","https://openalex.org/W2143447881","https://openalex.org/W2151308110","https://openalex.org/W2160286042","https://openalex.org/W2168615373","https://openalex.org/W2169150522","https://openalex.org/W2170906307","https://openalex.org/W4322384960","https://openalex.org/W6634366707","https://openalex.org/W6659128459","https://openalex.org/W6684424263"],"related_works":["https://openalex.org/W2145379833","https://openalex.org/W2211600733","https://openalex.org/W4200205140","https://openalex.org/W2520430930","https://openalex.org/W2796118888","https://openalex.org/W4206315232","https://openalex.org/W3162047485","https://openalex.org/W2084068585","https://openalex.org/W2108405889","https://openalex.org/W2151954452"],"abstract_inverted_index":{"Alternative":[0,13],"splicing":[1,14,31,46,62,85,93,99,121,139,153,169,202,209,229],"of":[2,15,22,70,79,82,89,118,130,166,185,195,225],"a":[3,41,66,96],"single":[4,42],"pre-mRNA":[5],"can":[6],"give":[7],"rise":[8],"to":[9,113,136,188,216],"different":[10],"mRNA":[11],"transcripts.":[12],"pre-messenger":[16],"RNA":[17],"is":[18,32,47],"an":[19,33,48],"important":[20,34,49],"layer":[21],"gene":[23],"expression":[24],"regulation":[25],"in":[26,68,214],"eukaryotic":[27],"cell.":[28],"Consequently,":[29],"alternative":[30,45,61,84,92,98,120,138,152,168,201,208,228],"mechanism":[35],"for":[36],"generating":[37,90],"protein":[38],"diversity":[39],"from":[40,95],"gene.":[43],"Although":[44],"biological":[50],"process,":[51],"standard":[52],"molecular":[53],"biology":[54],"techniques":[55],"have":[56],"only":[57],"identified":[58],"several":[59,164],"hundred":[60],"variants":[63,154],"and":[64,87,101,106,221,227],"create":[65],"bottleneck":[67],"terms":[69],"experimental":[71],"validation.":[72],"In":[73],"this":[74],"paper,":[75],"we":[76,142,162,192,211],"propose":[77,143],"methods":[78,177],"obtaining":[80],"models":[81,105],"weighted":[83,97],"graphs":[86],"ways":[88],"all":[91,150],"forms":[94],"graph":[100],"formulate":[102],"linear":[103,110,144,235],"programming":[104,111,236],"use":[107],"the":[108,115,124,127,189,200,218,223,233],"popular":[109],"solver":[112],"obtain":[114],"quantitative":[116],"distributions":[117],"various":[119],"forms.":[122],"Basically,":[123],"method":[125],"uses":[126],"UniGene":[128],"clusters":[129],"human":[131],"expressed":[132],"sequence":[133],"tags":[134],"(ESTs)":[135],"identify":[137,193],"sites.":[140,203],"Furthermore,":[141],"time":[145],"algorithms":[146],"that":[147],"correctly":[148],"produce":[149],"possible":[151],"with":[155,176],"their":[156],"corresponding":[157],"probabilities.":[158],"Using":[159],"these":[160,171,206],"methods,":[161],"infer":[163],"sets":[165],"putative":[167,207],"forms;":[170],"results":[172],"are":[173],"then":[174],"compared":[175],"proposed":[178],"by":[179,182,231],"others.":[180],"Then":[181],"aligning":[183],"sequences":[184],"EST":[186,219,226],"database":[187],"genomic":[190],"data,":[191],"locations":[194],"exons":[196],"as":[197,199],"well":[198],"To":[204],"quantify":[205],"forms,":[210],"choose":[212],"segments":[213],"genome":[215],"count":[217],"number,":[220],"combine":[222],"information":[224],"form":[230],"constructing":[232],"suitable":[234],"model.":[237]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
