{"id":"https://openalex.org/W2098138703","doi":"https://doi.org/10.1109/bibe.2004.1317347","title":"ARMEDA II: supporting genomic medicine through the integration of medical and genetic databases","display_name":"ARMEDA II: supporting genomic medicine through the integration of medical and genetic databases","publication_year":2004,"publication_date":"2004-11-30","ids":{"openalex":"https://openalex.org/W2098138703","doi":"https://doi.org/10.1109/bibe.2004.1317347","mag":"2098138703"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2004.1317347","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317347","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://oa.upm.es/74862/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042235673","display_name":"Miguel Garc\u00eda-Remesal","orcid":"https://orcid.org/0000-0002-5948-8691"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]},{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"M. Garcia-Remesal","raw_affiliation_strings":["Biomedical Informatics Group, Polytechnical University of Madrid, Spain","Biomed. Informatics Group, Polytech. Univ. of Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Group, Polytechnical University of Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Biomed. Informatics Group, Polytech. Univ. of Madrid, Spain","institution_ids":["https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069600756","display_name":"V\u00edctor Maojo","orcid":"https://orcid.org/0000-0001-5103-4292"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]},{"id":"https://openalex.org/I4210131846","display_name":"Artificial Intelligence Research Institute","ror":"https://ror.org/03c0ach84","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210131846"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"V. Maojo","raw_affiliation_strings":["Artificial Intelligence Group, University King Juan Madrid, Spain","Biomed. Informatics Group, Polytech. Univ. of Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Group, University King Juan Madrid, Spain","institution_ids":["https://openalex.org/I4210131846"]},{"raw_affiliation_string":"Biomed. Informatics Group, Polytech. Univ. of Madrid, Spain","institution_ids":["https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052621336","display_name":"Holger Billhardt","orcid":"https://orcid.org/0000-0001-8298-4178"},"institutions":[{"id":"https://openalex.org/I4210131846","display_name":"Artificial Intelligence Research Institute","ror":"https://ror.org/03c0ach84","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210131846"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"H. Billhardt","raw_affiliation_strings":["Artificial Intelligence Group, University King Juan Madrid, Spain","[Artificial Intelligence Group, University King Juan Madrid, Spain]"],"affiliations":[{"raw_affiliation_string":"Artificial Intelligence Group, University King Juan Madrid, Spain","institution_ids":["https://openalex.org/I4210131846"]},{"raw_affiliation_string":"[Artificial Intelligence Group, University King Juan Madrid, Spain]","institution_ids":["https://openalex.org/I4210131846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101718018","display_name":"Jos\u00e9 Crespo","orcid":"https://orcid.org/0000-0002-0772-5421"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"J. Crespo","raw_affiliation_strings":["Biomedical Informatics Group, Polytechnical University of Madrid, Spain","Biomedical Informatics Group, Polytechnical University of Madrid, SPAIN"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Group, Polytechnical University of Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Biomedical Informatics Group, Polytechnical University of Madrid, SPAIN","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069316570","display_name":"Ra\u00fal Alonso-Calvo","orcid":"https://orcid.org/0000-0002-2803-0215"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"R. Alonso-Calvo","raw_affiliation_strings":["Biomedical Informatics Group, Polytechnical University of Madrid, Spain","Biomedical Informatics Group, Polytechnical University of Madrid, SPAIN"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Group, Polytechnical University of Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Biomedical Informatics Group, Polytechnical University of Madrid, SPAIN","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113656515","display_name":"David P\u00e9rez-Rey","orcid":null},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"D. Perez-Rey","raw_affiliation_strings":["Biomedical Informatics Group, Polytechnical University of Madrid, Spain","Biomedical Informatics Group, Polytechnical University of Madrid, SPAIN"],"affiliations":[{"raw_affiliation_string":"Biomedical Informatics Group, Polytechnical University of Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Biomedical Informatics Group, Polytechnical University of Madrid, SPAIN","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087451743","display_name":"Franz Mart\u0131\u0301n","orcid":"https://orcid.org/0000-0002-5745-8704"},"institutions":[{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"F. Martin","raw_affiliation_strings":["Bioinformatics Unit, Institute of Health Carlos III, Madrid, Spain","[Bioinformatics Unit, Institute of Health Carlos III, Madrid, Spain]"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Unit, Institute of Health Carlos III, Madrid, Spain","institution_ids":["https://openalex.org/I2801357902"]},{"raw_affiliation_string":"[Bioinformatics Unit, Institute of Health Carlos III, Madrid, Spain]","institution_ids":["https://openalex.org/I2801357902"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083221647","display_name":"A. Sousa","orcid":"https://orcid.org/0000-0001-9902-3998"},"institutions":[{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"A. Sousa","raw_affiliation_strings":["IEETA, University of Aveiro, Portugal","IEETA / University of Aveiro, Portugal"],"affiliations":[{"raw_affiliation_string":"IEETA, University of Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]},{"raw_affiliation_string":"IEETA / University of Aveiro, Portugal","institution_ids":["https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5042235673"],"corresponding_institution_ids":["https://openalex.org/I121748325","https://openalex.org/I88060688"],"apc_list":null,"apc_paid":null,"fwci":2.053,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.91428571,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"90","issue":null,"first_page":"227","last_page":"234"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9695000052452087,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7382371425628662},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7242684364318848},{"id":"https://openalex.org/keywords/unification","display_name":"Unification","score":0.7168899774551392},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.5818410515785217},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4809383749961853},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46622446179389954},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3094370663166046},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11492115259170532}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7382371425628662},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7242684364318848},{"id":"https://openalex.org/C96146094","wikidata":"https://www.wikidata.org/wiki/Q609057","display_name":"Unification","level":2,"score":0.7168899774551392},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.5818410515785217},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4809383749961853},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46622446179389954},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3094370663166046},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11492115259170532}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibe.2004.1317347","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317347","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},{"id":"pmh:oai:oa.upm.es:74862","is_oa":true,"landing_page_url":"https://oa.upm.es/74862/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196323","display_name":"UPM Digital Archive (Technical University of Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I88060688","host_organization_name":"Universidad Polit\u00e9cnica de Madrid","host_organization_lineage":["https://openalex.org/I88060688"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fourth IEEE Symposium on Bioinformatics and Bioengineering: BIBE 2004, 19 - 21 May 2004, Taichung, Taiwan, ROC, proceedings | Fourth IEEE Symposium on Bioinformatics and Bioengineering | 19 - 21 May 2004 | Taichung, Taiwan","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:oa.upm.es:74862","is_oa":true,"landing_page_url":"https://oa.upm.es/74862/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196323","display_name":"UPM Digital Archive (Technical University of Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I88060688","host_organization_name":"Universidad Polit\u00e9cnica de Madrid","host_organization_lineage":["https://openalex.org/I88060688"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fourth IEEE Symposium on Bioinformatics and Bioengineering: BIBE 2004, 19 - 21 May 2004, Taichung, Taiwan, ROC, proceedings | Fourth IEEE Symposium on Bioinformatics and Bioengineering | 19 - 21 May 2004 | Taichung, Taiwan","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W128720162","https://openalex.org/W339545634","https://openalex.org/W1551010427","https://openalex.org/W1565043690","https://openalex.org/W1592458933","https://openalex.org/W1597688903","https://openalex.org/W1625047181","https://openalex.org/W1660390307","https://openalex.org/W1968766436","https://openalex.org/W1978227866","https://openalex.org/W1983594585","https://openalex.org/W2020059659","https://openalex.org/W2020514031","https://openalex.org/W2023064045","https://openalex.org/W2029555993","https://openalex.org/W2052688794","https://openalex.org/W2066610120","https://openalex.org/W2072001200","https://openalex.org/W2080402044","https://openalex.org/W2102627654","https://openalex.org/W2111316563","https://openalex.org/W2111380879","https://openalex.org/W2114617811","https://openalex.org/W2119647569","https://openalex.org/W2130660124","https://openalex.org/W2141824507","https://openalex.org/W2144192824","https://openalex.org/W2144679084","https://openalex.org/W2146754843","https://openalex.org/W2148374179","https://openalex.org/W2154836536","https://openalex.org/W2156610741","https://openalex.org/W2158030545","https://openalex.org/W2159888038","https://openalex.org/W2160066518","https://openalex.org/W2160484851","https://openalex.org/W2160948978","https://openalex.org/W2162170909","https://openalex.org/W2168605051","https://openalex.org/W2172549414","https://openalex.org/W2431994913","https://openalex.org/W2945526390","https://openalex.org/W4235350695","https://openalex.org/W6635754866","https://openalex.org/W6636447228","https://openalex.org/W6676491852","https://openalex.org/W6681847933","https://openalex.org/W6682655823","https://openalex.org/W6683843930","https://openalex.org/W6685410571","https://openalex.org/W6987865534"],"related_works":["https://openalex.org/W2367630557","https://openalex.org/W101666983","https://openalex.org/W2183792531","https://openalex.org/W2595286499","https://openalex.org/W2794344379","https://openalex.org/W2489197555","https://openalex.org/W2058118494","https://openalex.org/W2392768766","https://openalex.org/W2471908688","https://openalex.org/W1845283042"],"abstract_inverted_index":{"In":[0,23],"this":[1,24],"paper":[2],"we":[3,26],"present":[4],"ARMEDA":[5,125,180],"II,":[6],"a":[7,29,135,157],"project":[8,182,190],"designed":[9],"to":[10,75,79,107,144],"integrate":[11,59],"distributed":[12],"heterogeneous":[13],"medical":[14],"and":[15,63,83,137],"genetic":[16,141],"databases":[17,78],"in":[18,192],"support":[19],"of":[20,52,96,124,150,160,187,195],"genomic":[21],"medicine.":[22],"project,":[25],"have":[27],"followed":[28],"\"virtual":[30,93],"repository\"":[31],"or":[32],"VR":[33,100],"approach.":[34],"Although":[35],"VRs":[36],"are":[37],"entities":[38],"that":[39,58],"do":[40],"not":[41],"contain":[42],"any":[43],"data,":[44],"but":[45],"metadata,":[46],"they":[47],"give":[48],"users":[49],"the":[50,80,92,97,102,121,138,145,151,166,172,176,184,193],"perception":[51],"being":[53],"working":[54],"with":[55],"local":[56],"repositories":[57],"data":[60,142],"from":[61,134],"different":[62],"remote":[64],"sources.":[65],"Our":[66],"approach":[67],"is":[68,90,183],"based":[69],"on":[70],"two":[71,116,128],"basic":[72],"operators":[73],"employed":[74],"connect":[76],"new":[77],"system:":[81],"mapping":[82,86],"unification.":[84],"The":[85,148,179],"process":[87,104],"produces":[88],"what":[89],"called":[91],"conceptual":[94],"schema\"":[95],"newly":[98],"created":[99],"while":[101],"unification":[103],"provides":[105],"tools":[106],"create":[108],"an":[109,188,196],"integrated":[110],"virtual":[111],"schema":[112],"for":[113],"at":[114],"least":[115],"pre-existing":[117],"VRs.":[118],"We":[119],"tested":[120],"current":[122,185],"implementation":[123],"Il":[126],"using":[127,156],"tumor":[129,146],"databases,":[130],"one":[131],"containing":[132,140],"information":[133],"hospital":[136],"other":[139],"associated":[143],"samples.":[147],"performance":[149],"system":[152,173],"was":[153],"also":[154],"evaluated":[155],"pre-created":[158],"set":[159],"30":[161],"queries.":[162],"For":[163],"all":[164],"queries":[165],"test":[167],"yielded":[168],"promising":[169],"results":[170],"since":[171],"successfully":[174],"retrieved":[175],"correct":[177],"information.":[178],"II":[181],"version":[186],"ongoing":[189],"developed":[191],"framework":[194],"European":[197],"Commission":[198],"funded":[199],"project.":[200]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
