{"id":"https://openalex.org/W2111962239","doi":"https://doi.org/10.1109/bibe.2004.1317337","title":"Design of specie-specific primers for virus diagnosis in plants with PCR","display_name":"Design of specie-specific primers for virus diagnosis in plants with PCR","publication_year":2004,"publication_date":"2004-11-30","ids":{"openalex":"https://openalex.org/W2111962239","doi":"https://doi.org/10.1109/bibe.2004.1317337","mag":"2111962239"},"language":"en","primary_location":{"id":"doi:10.1109/bibe.2004.1317337","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317337","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026915702","display_name":"Kelly Cristina Gon\u00e7ales Rocha","orcid":null},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"K. Rocha","raw_affiliation_strings":["DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","Univ. Fed. do Rio Grande do Norte, Natal, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","institution_ids":["https://openalex.org/I35046152"]},{"raw_affiliation_string":"Univ. Fed. do Rio Grande do Norte, Natal, Brazil","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111916708","display_name":"Carlos\u2010Antonio Medeiros","orcid":null},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"C. Medeiros","raw_affiliation_strings":["DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","Univ. Fed. do Rio Grande do Norte, Natal, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","institution_ids":["https://openalex.org/I35046152"]},{"raw_affiliation_string":"Univ. Fed. do Rio Grande do Norte, Natal, Brazil","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086078831","display_name":"M. Monteiro","orcid":"https://orcid.org/0000-0003-1617-2264"},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"M. Monteiro","raw_affiliation_strings":["DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","Univ. Fed. do Rio Grande do Norte, Natal, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","institution_ids":["https://openalex.org/I35046152"]},{"raw_affiliation_string":"Univ. Fed. do Rio Grande do Norte, Natal, Brazil","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010487704","display_name":"Luiz Marcos Garcia Gon\u00e7alves","orcid":"https://orcid.org/0000-0002-7735-5630"},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"L. Goncalves","raw_affiliation_strings":["DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","Univ. Fed. do Rio Grande do Norte, Natal, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","institution_ids":["https://openalex.org/I35046152"]},{"raw_affiliation_string":"Univ. Fed. do Rio Grande do Norte, Natal, Brazil","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038010680","display_name":"Paula Eillanny Silva Marinho","orcid":null},"institutions":[{"id":"https://openalex.org/I35046152","display_name":"Universidade Federal do Rio Grande do Norte","ror":"https://ror.org/04wn09761","country_code":"BR","type":"education","lineage":["https://openalex.org/I35046152"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"P. Marinho","raw_affiliation_strings":["DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","Univ. Fed. do Rio Grande do Norte, Natal, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DCA-CT-UFRN, Lagoa Nova, Universidade Federal do Rio Grande do Norte, Natal, Rio Grande do Norte, Brazil","institution_ids":["https://openalex.org/I35046152"]},{"raw_affiliation_string":"Univ. Fed. do Rio Grande do Norte, Natal, Brazil","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I35046152"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":null,"first_page":"149","last_page":"155"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/primer","display_name":"Primer (cosmetics)","score":0.9430108070373535},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.6286638975143433},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5705788135528564},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.567793607711792},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5417332053184509},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45814651250839233},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.45062074065208435},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4251219928264618},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.421960711479187},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.369708776473999},{"id":"https://openalex.org/keywords/molecular-biology","display_name":"Molecular biology","score":0.3335787057876587},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13043636083602905}],"concepts":[{"id":"https://openalex.org/C2777563447","wikidata":"https://www.wikidata.org/wiki/Q7243397","display_name":"Primer (cosmetics)","level":2,"score":0.9430108070373535},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.6286638975143433},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5705788135528564},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.567793607711792},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5417332053184509},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45814651250839233},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.45062074065208435},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4251219928264618},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.421960711479187},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.369708776473999},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.3335787057876587},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13043636083602905},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibe.2004.1317337","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibe.2004.1317337","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1997110206","https://openalex.org/W2007823021","https://openalex.org/W2052532932","https://openalex.org/W2072911318","https://openalex.org/W2080279646","https://openalex.org/W2088160482","https://openalex.org/W2117295257","https://openalex.org/W2482927381","https://openalex.org/W2506578802"],"related_works":["https://openalex.org/W2375570161","https://openalex.org/W2371958667","https://openalex.org/W2333833013","https://openalex.org/W4379233589","https://openalex.org/W2360079597","https://openalex.org/W3000699638","https://openalex.org/W1875391864","https://openalex.org/W167405190","https://openalex.org/W2069409970","https://openalex.org/W2089399380"],"abstract_inverted_index":{"We":[0,101],"propose":[1],"a":[2,35,48,122],"specialist":[3],"software":[4],"to":[5,14,21,33,92,113,120],"diagnose":[6],"viral":[7,29,116],"disease":[8],"in":[9,90],"plants.":[10],"Our":[11],"strategy":[12],"is":[13],"align":[15],"nucleotide":[16],"sequences":[17,85],"of":[18,25,27,69],"plant":[19],"virus":[20,123],"discover":[22],"specie-specific":[23],"regions":[24],"genes":[26],"the":[28],"genomes,":[30],"so":[31],"as":[32,67],"design":[34],"primer.":[36],"The":[37,53,80],"program":[38,81],"designs":[39],"oligo-nucleotide":[40],"primers":[41,109],"used":[42,112,119],"for":[43,61],"polymerase":[44],"chain":[45],"reaction":[46],"(PCR),":[47],"very":[49],"cheap":[50],"diagnosis":[51],"technique.":[52],"user":[54],"can":[55],"specify":[56],"(or":[57],"use":[58],"default)":[59],"constraints":[60],"primer":[62,77,84,98],"and":[63,76,97],"amplified":[64],"product":[65],"lengths,":[66],"percentage":[68],"G+C,":[70],"absolute":[71],"or":[72],"relative":[73],"melting":[74],"temperatures,":[75],"3'":[78],"nucleotides.":[79],"screens":[82],"candidate":[83],"with":[86],"displayed":[87],"user-specifiable":[88],"parameters":[89],"order":[91],"help":[93],"minimizing":[94],"nonspecific":[95],"priming":[96],"secondary":[99],"structure.":[100],"tested":[102],"this":[103],"tool":[104],"by":[105],"designing":[106],"two":[107],"specific":[108],"which":[110],"were":[111],"amplify":[114],"known":[115],"species,":[117],"then":[118],"perform":[121],"diagnosis.":[124]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
