{"id":"https://openalex.org/W4408521274","doi":"https://doi.org/10.1109/bhi62660.2024.10913641","title":"Improving Interpretability of Radiology Report-based Pediatric Brain Tumor Pathology Classification and Key-phrases Extraction Using Large Language Models","display_name":"Improving Interpretability of Radiology Report-based Pediatric Brain Tumor Pathology Classification and Key-phrases Extraction Using Large Language Models","publication_year":2024,"publication_date":"2024-11-10","ids":{"openalex":"https://openalex.org/W4408521274","doi":"https://doi.org/10.1109/bhi62660.2024.10913641"},"language":"en","primary_location":{"id":"doi:10.1109/bhi62660.2024.10913641","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bhi62660.2024.10913641","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100352002","display_name":"Zhao Chen","orcid":"https://orcid.org/0000-0002-5782-3329"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chen Zhao","raw_affiliation_strings":["University of Toronto,Department of Mechanical and Industrial Engineering,Toronto,ON,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Toronto,Department of Mechanical and Industrial Engineering,Toronto,ON,Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037321888","display_name":"Kareem Kudus","orcid":null},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Kareem Kudus","raw_affiliation_strings":["Research Institute, The Hospital for Sick Children,Neurosciences &#x0026; Mental Health Research Program,Toronto,ON,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute, The Hospital for Sick Children,Neurosciences &#x0026; Mental Health Research Program,Toronto,ON,Canada","institution_ids":["https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055867377","display_name":"Sara Ketabi","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sara Ketabi","raw_affiliation_strings":["University of Toronto,Department of Mechanical and Industrial Engineering,Toronto,ON,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Toronto,Department of Mechanical and Industrial Engineering,Toronto,ON,Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085138985","display_name":"Khashayar Namdar","orcid":"https://orcid.org/0000-0003-0497-6206"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Khashayar Namdar","raw_affiliation_strings":["Research Institute, The Hospital for Sick Children,Neurosciences &#x0026; Mental Health Research Program,Toronto,ON,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute, The Hospital for Sick Children,Neurosciences &#x0026; Mental Health Research Program,Toronto,ON,Canada","institution_ids":["https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066085902","display_name":"Matthias Wagner","orcid":"https://orcid.org/0000-0001-6501-839X"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Matthias W. Wagner","raw_affiliation_strings":["The Hospital for Sick Children,Department of Diagnostic &#x0026; Interventional Radiology,Toronto,ON,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Hospital for Sick Children,Department of Diagnostic &#x0026; Interventional Radiology,Toronto,ON,Canada","institution_ids":["https://openalex.org/I2801317318"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082839686","display_name":"Birgit Ertl\u2010Wagner","orcid":"https://orcid.org/0000-0001-5306-7549"},"institutions":[{"id":"https://openalex.org/I2801317318","display_name":"Hospital for Sick Children","ror":"https://ror.org/057q4rt57","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801317318"]},{"id":"https://openalex.org/I4210141030","display_name":"SickKids Foundation","ror":"https://ror.org/04374qe70","country_code":"CA","type":"funder","lineage":["https://openalex.org/I4210141030"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Birgit B. Ertl-Wagner","raw_affiliation_strings":["Research Institute, The Hospital for Sick Children,Neurosciences &#x0026; Mental Health Research Program,Toronto,ON,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Institute, The Hospital for Sick Children,Neurosciences &#x0026; Mental Health Research Program,Toronto,ON,Canada","institution_ids":["https://openalex.org/I2801317318","https://openalex.org/I4210141030"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034208717","display_name":"Farzad Khalvati","orcid":"https://orcid.org/0000-0001-5616-8660"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Farzad Khalvati","raw_affiliation_strings":["University of Toronto,Department of Mechanical and Industrial Engineering,Toronto,ON,Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Toronto,Department of Mechanical and Industrial Engineering,Toronto,ON,Canada","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.24395143,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9390000104904175,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8901069760322571},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7106247544288635},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.7055893540382385},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6184807419776917},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.587748110294342},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4286743402481079},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.41081559658050537},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.37873709201812744},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.303739070892334}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8901069760322571},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7106247544288635},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.7055893540382385},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6184807419776917},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.587748110294342},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4286743402481079},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.41081559658050537},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.37873709201812744},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.303739070892334},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bhi62660.2024.10913641","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bhi62660.2024.10913641","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE EMBS International Conference on Biomedical and Health Informatics (BHI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W2115148430","https://openalex.org/W2115570566","https://openalex.org/W2123152121","https://openalex.org/W2146089916","https://openalex.org/W2159583324","https://openalex.org/W2250539671","https://openalex.org/W2952682849","https://openalex.org/W2970819616","https://openalex.org/W2972324944","https://openalex.org/W3035833355","https://openalex.org/W3129922404","https://openalex.org/W3138588354","https://openalex.org/W4206965408","https://openalex.org/W4225013498","https://openalex.org/W4385245566","https://openalex.org/W4391170193","https://openalex.org/W6682082992","https://openalex.org/W6755207826","https://openalex.org/W6758293299","https://openalex.org/W6761260114","https://openalex.org/W6776633903","https://openalex.org/W6801011098","https://openalex.org/W6846305076","https://openalex.org/W6848173405"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W4312407344","https://openalex.org/W2368651715"],"abstract_inverted_index":{"Radiology":[0],"reports":[1,19,72],"are":[2],"crucial":[3],"for":[4,44,51,90,152,173],"bridging":[5],"the":[6,32,55,59,88,143,169],"expertise":[7],"of":[8,34,58,138],"radiologists":[9,52],"and":[10,50,96,99,123,150,157,166,176],"other":[11],"clinicians.":[12],"Machine":[13],"Learning":[14],"models":[15,49,69,82],"trained":[16],"on":[17,39,70,121],"these":[18,48],"have":[20],"shown":[21],"promising":[22],"performance":[23],"in":[24],"various":[25],"downstream":[26],"clinical":[27],"tasks,":[28],"such":[29],"as":[30,168],"predicting":[31],"necessity":[33],"future":[35],"follow-up":[36],"procedures,":[37],"based":[38,120],"past":[40],"radiology":[41,71,106],"reports.":[42],"However,":[43],"clinicians":[45],"to":[46,53,73,102,116],"adopt":[47],"validate":[54],"results,":[56],"interpretability":[57],"model":[60],"is":[61],"essential.":[62],"In":[63],"this":[64],"study,":[65],"we":[66,108],"train":[67],"BERT":[68],"classify":[74],"pediatric":[75],"brain":[76],"tumor":[77],"pathologies.":[78],"These":[79],"large":[80],"language":[81],"enable":[83],"accurate":[84],"report-level":[85],"classification,":[86],"without":[87],"need":[89],"costly":[91],"word-level":[92],"annotations.":[93],"To":[94],"identify":[95],"extract":[97],"keywords":[98],"key-phrases":[100],"related":[101],"distinct":[103],"pathologies":[104],"from":[105],"reports,":[107],"used":[109],"a":[110],"modified":[111],"Term":[112],"Frequency-Inverse":[113],"Document":[114],"Frequency":[115],"determine":[117],"phrase":[118],"importance":[119],"prevalence":[122],"attributions":[124],"scores.":[125],"We":[126],"achieved":[127],"an":[128],"overall":[129],"multiclass":[130],"Area":[131],"Under":[132],"Receiver":[133],"Operating":[134],"Characteristic":[135],"Curve":[136],"(AUROC)":[137],"79.57%":[139],"using":[140],"ClinicaiBERT.":[141],"Moreover,":[142],"per-class":[144],"AUROC":[145],"values":[146],"were":[147],"86%,":[148],"71.2%,":[149],"81.5%,":[151],"\u2018Pilocytic":[153,174],"Astrocytoma\u2019,":[154,156,178],"\u2018Low-Grade":[155,177],"\u2018Other\u2019":[158],"pathologies,":[159],"respectively.":[160,179],"Our":[161],"explainability":[162],"analysis":[163],"identified":[164],"hypotonia":[165],"mesencephalon":[167],"most":[170],"important":[171],"terms":[172],"Astrocytoma\u2019":[175]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
