{"id":"https://openalex.org/W2973090135","doi":"https://doi.org/10.1109/bhi.2019.8834494","title":"Classification before Segmentation: Improved U-Net Prostate Segmentation","display_name":"Classification before Segmentation: Improved U-Net Prostate Segmentation","publication_year":2019,"publication_date":"2019-05-01","ids":{"openalex":"https://openalex.org/W2973090135","doi":"https://doi.org/10.1109/bhi.2019.8834494","mag":"2973090135"},"language":"en","primary_location":{"id":"doi:10.1109/bhi.2019.8834494","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bhi.2019.8834494","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE EMBS International Conference on Biomedical &amp; Health Informatics (BHI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071595458","display_name":"Ronald J. Nowling","orcid":"https://orcid.org/0000-0002-2757-9986"},"institutions":[{"id":"https://openalex.org/I50702494","display_name":"Milwaukee School of Engineering","ror":"https://ror.org/04h7cfr36","country_code":"US","type":"education","lineage":["https://openalex.org/I50702494"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ronald J. Nowling","raw_affiliation_strings":["Milwaukee School of Engineering, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Milwaukee School of Engineering, Milwaukee, WI","institution_ids":["https://openalex.org/I50702494"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018920050","display_name":"John D. Bukowy","orcid":"https://orcid.org/0000-0002-4411-3643"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Bukowy","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080491768","display_name":"Sean D. McGarry","orcid":"https://orcid.org/0000-0003-4937-2780"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean D. McGarry","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029597528","display_name":"Andrew S. Nencka","orcid":"https://orcid.org/0000-0001-5268-2718"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew S. Nencka","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033472619","display_name":"Oliver Blasko","orcid":null},"institutions":[{"id":"https://openalex.org/I50702494","display_name":"Milwaukee School of Engineering","ror":"https://ror.org/04h7cfr36","country_code":"US","type":"education","lineage":["https://openalex.org/I50702494"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oliver Blasko","raw_affiliation_strings":["Milwaukee School of Engineering, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Milwaukee School of Engineering, Milwaukee, WI","institution_ids":["https://openalex.org/I50702494"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034725251","display_name":"Jay Urbain","orcid":null},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jay Urbain","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089858638","display_name":"Allison Lowman","orcid":"https://orcid.org/0000-0002-2520-8145"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allison Lowman","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002708951","display_name":"Alexander Barrington","orcid":null},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Barrington","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044298637","display_name":"Anjishnu Banerjee","orcid":"https://orcid.org/0000-0002-6898-9148"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anjishnu Banerjee","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006909847","display_name":"Kenneth A. Iczkowski","orcid":"https://orcid.org/0000-0002-8909-8811"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth A. Iczkowski","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032574031","display_name":"Peter S. LaViolette","orcid":"https://orcid.org/0000-0002-9602-6891"},"institutions":[{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter S. LaViolette","raw_affiliation_strings":["Medical College of Wisconsin, Milwaukee, WI"],"affiliations":[{"raw_affiliation_string":"Medical College of Wisconsin, Milwaukee, WI","institution_ids":["https://openalex.org/I204308271"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5071595458"],"corresponding_institution_ids":["https://openalex.org/I50702494"],"apc_list":null,"apc_paid":null,"fwci":1.2103,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.81141467,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10124","display_name":"Prostate Cancer Diagnosis and Treatment","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10124","display_name":"Prostate Cancer Diagnosis and Treatment","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10036","display_name":"Advanced Neural Network Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8533629179000854},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6737067699432373},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6724041700363159},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.532173216342926},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.5044387578964233},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.49861645698547363},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4904007911682129},{"id":"https://openalex.org/keywords/prostate","display_name":"Prostate","score":0.4644624590873718},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4571636915206909},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.44011813402175903},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.43438398838043213},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17326661944389343},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.07584041357040405},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.07067909836769104}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8533629179000854},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6737067699432373},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6724041700363159},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.532173216342926},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.5044387578964233},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.49861645698547363},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4904007911682129},{"id":"https://openalex.org/C2776235491","wikidata":"https://www.wikidata.org/wiki/Q9625","display_name":"Prostate","level":3,"score":0.4644624590873718},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4571636915206909},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.44011813402175903},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.43438398838043213},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17326661944389343},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.07584041357040405},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.07067909836769104},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bhi.2019.8834494","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bhi.2019.8834494","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE EMBS International Conference on Biomedical &amp; Health Informatics (BHI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17"},{"display_name":"Good health and well-being","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1870332787","https://openalex.org/W1901129140","https://openalex.org/W1965989311","https://openalex.org/W2019196989","https://openalex.org/W2106033751","https://openalex.org/W2109923019","https://openalex.org/W2570618306","https://openalex.org/W2726102591","https://openalex.org/W2786672974","https://openalex.org/W2800781799","https://openalex.org/W2962914239","https://openalex.org/W6639824700"],"related_works":["https://openalex.org/W1631910785","https://openalex.org/W2212329603","https://openalex.org/W1669643531","https://openalex.org/W2546232368","https://openalex.org/W1973226835","https://openalex.org/W1514982293","https://openalex.org/W2344532017","https://openalex.org/W134976887","https://openalex.org/W1544749586","https://openalex.org/W3175481588"],"abstract_inverted_index":{"Prostate":[0],"segmentation":[1,31,43,79,143],"is":[2,148],"a":[3,33,64,85,132,145,149,168],"necessary":[4],"pre-processing":[5],"step":[6,147],"for":[7,13,27,41],"computer-aided":[8],"detection":[9],"and":[10,16,30,78,116,125,142],"diagnosis":[11],"algorithms":[12],"prostate":[14,42,54],"disorders":[15],"associated":[17],"cancers.":[18],"Deep":[19],"learning":[20],"models":[21,62],"like":[22],"U-Net":[23,39,61,105,162],"offer":[24],"the":[25,38,60,104,114],"potential":[26],"performing":[28],"classification":[29,77,141],"in":[32,98,135,144],"single":[34,146],"step.":[35],"We":[36,74],"evaluated":[37],"model":[40,106],"on":[44],"1,235":[45],"Magnetic":[46],"Resonance":[47],"(MR)":[48],"images":[49],"from":[50],"39":[51],"patients":[52],"with":[53],"cancer.":[55],"On":[56],"our":[57,108],"data":[58],"set,":[59],"generated":[63],"substantial":[65],"number":[66],"of":[67,72,94,121,127],"false-positive":[68],"predictions":[69],"(average":[70],"precision":[71,126,165],"67.6%).":[73],"propose":[75],"separating":[76],"into":[80],"distinct":[81],"tasks":[82],"implemented":[83],"via":[84],"pipeline.":[86],"Our":[87,152],"classifier":[88],"achieved":[89],"an":[90],"average":[91],"ROC":[92],"AUC":[93],"97.7%":[95],"(SD":[96],"1.0%)":[97],"four-fold":[99],"cross-fold":[100],"validation.":[101],"Compared":[102],"to":[103,166],"alone,":[107],"pipeline":[109],"increased":[110],"overall":[111],"agreement":[112],"between":[113],"predicted":[115],"human-annotated":[117],"masks":[118],"(Dice":[119],"score":[120],"0.907":[122],"vs":[123,129,138],"0.758":[124],"83.2%":[128],"67.6%)":[130],"without":[131],"significant":[133],"loss":[134],"recall":[136],"(83.4%":[137],"85.6%).":[139],"Performing":[140],"desirable":[150],"goal.":[151],"results":[153],"suggest,":[154],"however,":[155],"that":[156],"improvements":[157],"are":[158],"still":[159],"needed":[160],"before":[161],"offers":[163],"comparable":[164],"using":[167],"separate":[169],"classifier.":[170]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
