{"id":"https://openalex.org/W2344178237","doi":"https://doi.org/10.1109/bhi.2016.7455931","title":"Toward patient-tailored summarization of lung cancer literature","display_name":"Toward patient-tailored summarization of lung cancer literature","publication_year":2016,"publication_date":"2016-02-01","ids":{"openalex":"https://openalex.org/W2344178237","doi":"https://doi.org/10.1109/bhi.2016.7455931","mag":"2344178237","pmid":"https://pubmed.ncbi.nlm.nih.gov/28721401"},"language":"en","primary_location":{"id":"doi:10.1109/bhi.2016.7455931","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bhi.2016.7455931","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022239852","display_name":"Jean Garcia-Gathright","orcid":"https://orcid.org/0009-0001-5550-640X"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jean I. Garcia-Gathright","raw_affiliation_strings":["University of California Los Angeles, Department of Bioengineering","Department of Bioengineering, University of California Los Angeles"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Department of Bioengineering","institution_ids":[]},{"raw_affiliation_string":"Department of Bioengineering, University of California Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065817890","display_name":"Nicholas J. Matiasz","orcid":"https://orcid.org/0000-0001-8245-3545"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas J. Matiasz","raw_affiliation_strings":["University of California Los Angeles, Department of Bioengineering","Department of Bioengineering, University of California Los Angeles"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Department of Bioengineering","institution_ids":[]},{"raw_affiliation_string":"Department of Bioengineering, University of California Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060287300","display_name":"Edward B. Garon","orcid":"https://orcid.org/0000-0001-7077-8801"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward B. Garon","raw_affiliation_strings":["University of California Los Angeles, Department of Medicine","Department of Medicine, University of California Los Angeles"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Department of Medicine","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Medicine, University of California Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068964857","display_name":"Denise R. Aberle","orcid":"https://orcid.org/0000-0002-8858-3401"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Denise R. Aberle","raw_affiliation_strings":["University of California Los Angeles, Department of Bioengineering","University of California Los Angeles, Department of Radiological Sciences","Department of Radiological Sciences, University of California Los Angeles"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Department of Bioengineering","institution_ids":[]},{"raw_affiliation_string":"University of California Los Angeles, Department of Radiological Sciences","institution_ids":[]},{"raw_affiliation_string":"Department of Radiological Sciences, University of California Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060061949","display_name":"Ricky K. Taira","orcid":"https://orcid.org/0000-0001-9754-8993"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ricky K. Taira","raw_affiliation_strings":["University of California Los Angeles, Department of Bioengineering","University of California Los Angeles, Department of Radiological Sciences","Department of Radiological Sciences, University of California Los Angeles"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Department of Bioengineering","institution_ids":[]},{"raw_affiliation_string":"University of California Los Angeles, Department of Radiological Sciences","institution_ids":[]},{"raw_affiliation_string":"Department of Radiological Sciences, University of California Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056478657","display_name":"Alex Bui","orcid":"https://orcid.org/0000-0002-4702-1373"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex A. T. Bui","raw_affiliation_strings":["University of California Los Angeles, Department of Bioengineering","University of California Los Angeles, Department of Radiological Sciences","Department of Radiological Sciences, University of California Los Angeles"],"affiliations":[{"raw_affiliation_string":"University of California Los Angeles, Department of Bioengineering","institution_ids":[]},{"raw_affiliation_string":"University of California Los Angeles, Department of Radiological Sciences","institution_ids":[]},{"raw_affiliation_string":"Department of Radiological Sciences, University of California Los Angeles","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5022239852"],"corresponding_institution_ids":["https://openalex.org/I161318765"],"apc_list":null,"apc_paid":null,"fwci":0.1743,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.63734274,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"2016","issue":null,"first_page":"449","last_page":"452"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.9520533084869385},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7940640449523926},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6790577173233032},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.570219874382019},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.535816490650177},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5300699472427368},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4944138526916504},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4933837950229645},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4722192585468292},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4512060880661011},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38393449783325195},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1898115873336792},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06497523188591003}],"concepts":[{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.9520533084869385},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7940640449523926},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6790577173233032},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.570219874382019},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.535816490650177},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5300699472427368},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4944138526916504},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4933837950229645},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4722192585468292},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4512060880661011},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38393449783325195},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1898115873336792},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06497523188591003},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/bhi.2016.7455931","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bhi.2016.7455931","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI)","raw_type":"proceedings-article"},{"id":"pmid:28721401","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28721401","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"... IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics","raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt54k7z2w9","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/54k7z2w9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4356553","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5511748","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W79139011","https://openalex.org/W1493270114","https://openalex.org/W1555476679","https://openalex.org/W1989734503","https://openalex.org/W2032115258","https://openalex.org/W2036935277","https://openalex.org/W2065477010","https://openalex.org/W2087779040","https://openalex.org/W2097960255","https://openalex.org/W2109070394","https://openalex.org/W2110279753","https://openalex.org/W2113202266","https://openalex.org/W2134568263","https://openalex.org/W2136866244","https://openalex.org/W2143448637","https://openalex.org/W2147154106","https://openalex.org/W2159583324","https://openalex.org/W2163362093","https://openalex.org/W2169254978","https://openalex.org/W6629460809","https://openalex.org/W6680352213"],"related_works":["https://openalex.org/W2366403280","https://openalex.org/W1495108544","https://openalex.org/W2091301346","https://openalex.org/W3148229873","https://openalex.org/W4389760904","https://openalex.org/W2150160875","https://openalex.org/W4242223894","https://openalex.org/W4306886878","https://openalex.org/W2973759123","https://openalex.org/W1517524280"],"abstract_inverted_index":{"As":[0],"the":[1,81,131,138],"volume":[2],"of":[3,25,35,73,83,116,140],"biomedical":[4],"literature":[5],"increases,":[6],"it":[7],"can":[8],"be":[9],"challenging":[10],"for":[11,69,94,108,124,128],"clinicians":[12],"to":[13,55,60,146],"stay":[14],"up-to-date.":[15],"Graphical":[16],"summarization":[17,49,72],"systems":[18,31,50],"help":[19],"by":[20],"condensing":[21],"knowledge":[22],"into":[23],"networks":[24],"entities":[26],"and":[27,57,96,126],"relations.":[28,129],"However,":[29],"existing":[30],"present":[32],"relations":[33,95,133],"out":[34],"context,":[36],"ignoring":[37],"key":[38,141],"details":[39],"such":[40,53],"as":[41],"study":[42,97],"population.":[43],"To":[44],"better":[45],"support":[46],"precision":[47],"medicine,":[48],"should":[51],"include":[52],"information":[54],"contextualize":[56],"tailor":[58],"results":[59],"individual":[61],"patients.":[62],"This":[63],"paper":[64],"introduces":[65],"\"contextualized":[66],"semantic":[67],"maps\"":[68],"patient-tailored":[70],"graphical":[71],"published":[74],"literature.":[75],"These":[76],"efforts":[77],"are":[78,144],"demonstrated":[79,134],"in":[80,86,100],"domain":[82],"driver":[84],"mutations":[85],"non-small":[87],"cell":[88],"lung":[89],"cancer":[90],"(NSCLC).":[91],"A":[92],"representation":[93,110],"population":[98],"context":[99,125,136],"NSCLC":[101],"was":[102,111,122],"developed.":[103],"An":[104],"annotated":[105],"gold":[106],"standard":[107],"this":[109],"created":[112],"from":[113],"a":[114],"set":[115],"135":[117],"abstracts;":[118],"F1-score":[119],"annotator":[120],"agreement":[121],"0.78":[123],"0.68":[127],"Visualizing":[130],"contextualized":[132],"that":[135,143],"facilitates":[137],"discovery":[139],"findings":[142],"relevant":[145],"patient-oriented":[147],"queries.":[148]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
