{"id":"https://openalex.org/W2569068633","doi":"https://doi.org/10.1109/besc.2016.7804492","title":"An effective system for managing biological data","display_name":"An effective system for managing biological data","publication_year":2016,"publication_date":"2016-11-01","ids":{"openalex":"https://openalex.org/W2569068633","doi":"https://doi.org/10.1109/besc.2016.7804492","mag":"2569068633"},"language":"en","primary_location":{"id":"doi:10.1109/besc.2016.7804492","is_oa":false,"landing_page_url":"https://doi.org/10.1109/besc.2016.7804492","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 International Conference on Behavioral, Economic and Socio-cultural Computing (BESC)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100340529","display_name":"Qian Li","orcid":"https://orcid.org/0000-0001-5495-3462"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qian Li","raw_affiliation_strings":["College of Computer and Control Engineering, Nankai University, Tianjin, China"],"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013188461","display_name":"Zhenglu Yang","orcid":"https://orcid.org/0000-0001-9528-965X"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenglu Yang","raw_affiliation_strings":["College of Computer and Control Engineering, Nankai University, Tianjin, China"],"affiliations":[{"raw_affiliation_string":"College of Computer and Control Engineering, Nankai University, Tianjin, China","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100694029","display_name":"Wei Cao","orcid":"https://orcid.org/0000-0001-9617-0984"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Wei Cao","raw_affiliation_strings":["Department of Biotechnology, The University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, The University of Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006608170","display_name":"Kentaro K. Shimizu","orcid":"https://orcid.org/0000-0002-6483-1781"},"institutions":[{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kentaro Shimizu","raw_affiliation_strings":["Department of Biotechnology, The University of Tokyo, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, The University of Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100340529"],"corresponding_institution_ids":["https://openalex.org/I205237279"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10723682,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7726244926452637},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5837447643280029},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.5634518265724182},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5559565424919128},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.46931004524230957},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.46850019693374634},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4438970386981964},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.44025349617004395},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4329304099082947},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.41424012184143066},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3733261227607727},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2643435001373291},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1887599527835846},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1642448902130127}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7726244926452637},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5837447643280029},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5634518265724182},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5559565424919128},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.46931004524230957},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.46850019693374634},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4438970386981964},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.44025349617004395},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4329304099082947},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.41424012184143066},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3733261227607727},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2643435001373291},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1887599527835846},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1642448902130127},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/besc.2016.7804492","is_oa":false,"landing_page_url":"https://doi.org/10.1109/besc.2016.7804492","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 International Conference on Behavioral, Economic and Socio-cultural Computing (BESC)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.4699999988079071,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W1593573895","https://openalex.org/W2074872734"],"related_works":["https://openalex.org/W4381571608","https://openalex.org/W4392894140","https://openalex.org/W2936116675","https://openalex.org/W2291027050","https://openalex.org/W2307569040","https://openalex.org/W1018570427","https://openalex.org/W1483126190","https://openalex.org/W2131941936","https://openalex.org/W4214664950","https://openalex.org/W2074162075"],"abstract_inverted_index":{"Nowadays,":[0],"life":[1],"scientists":[2],"grapple":[3],"with":[4,85,117],"a":[5,18,23,47,86,137,147],"problem":[6,71],"how":[7],"to":[8,57,108,143],"fast":[9],"and":[10,90,119,128,140],"easily":[11],"access/obtain":[12],"high":[13],"quality":[14],"data,":[15],"especially":[16],"for":[17,41,63],"specific":[19],"research":[20],"area,":[21],"from":[22,59],"large":[24],"amount":[25],"of":[26,49,66,99,104,114],"biological":[27,43],"data":[28,44],"deposited":[29],"in":[30,146],"public":[31],"databases.":[32],"In":[33],"this":[34],"work,":[35],"we":[36],"developed":[37],"an":[38],"effective":[39,112],"system":[40,82],"managing":[42],"which":[45],"are":[46,55],"class":[48],"functionally":[50],"important":[51],"membrane":[52],"protein;":[53],"they":[54],"hard":[56],"collected":[58],"the":[60,96,105,144],"existing":[61],"databases":[62],"slow":[64],"progress":[65],"protein":[67,100],"annotations,":[68],"transitive":[69],"annotation":[70,97],"as":[72,74],"well":[73],"low":[75],"sequence":[76,121],"similarity":[77],"among":[78],"them.":[79],"Our":[80],"preliminary":[81],"was":[83],"designed":[84],"user-friendly":[87],"web":[88],"interface":[89],"provides:":[91],"1)":[92],"keywords":[93],"retrieval":[94],"against":[95],"information":[98],"sequences,":[101],"2)":[102],"recommendation":[103],"related":[106],"publications":[107],"help":[109],"researchers":[110,145],"conduct":[111],"comparisons":[113],"experimental":[115],"results":[116],"convenience,":[118],"3)":[120],"alignment":[122],"service":[123],"(BLAST-based":[124],"by":[125,132],"NCBI":[126],"blast+":[127],"Hidden":[129],"Markov":[130],"Model-based":[131],"HMMER3.0).":[133],"We":[134],"had":[135],"conducted":[136],"statistical":[138],"analysis":[139],"showed":[141],"it":[142],"visual":[148],"way.":[149]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}