{"id":"https://openalex.org/W1931416451","doi":"https://doi.org/10.1109/bdva.2015.7314292","title":"Evaluating the Effectiveness of Color to Convey Alignment Quality in Macromolecular Structures","display_name":"Evaluating the Effectiveness of Color to Convey Alignment Quality in Macromolecular Structures","publication_year":2015,"publication_date":"2015-09-01","ids":{"openalex":"https://openalex.org/W1931416451","doi":"https://doi.org/10.1109/bdva.2015.7314292","mag":"1931416451"},"language":"en","primary_location":{"id":"doi:10.1109/bdva.2015.7314292","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bdva.2015.7314292","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 Big Data Visual Analytics (BDVA)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102872139","display_name":"Julian Heinrich","orcid":"https://orcid.org/0000-0002-5353-3914"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Julian Heinrich","raw_affiliation_strings":["Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, AU"],"affiliations":[{"raw_affiliation_string":"Commonwealth Scientific and Industrial Research Organisation, Canberra, ACT, AU","institution_ids":["https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000119945","display_name":"Sandeep Kaur","orcid":"https://orcid.org/0000-0003-0356-3151"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sandeep Kaur","raw_affiliation_strings":["UNSW, Australia"],"affiliations":[{"raw_affiliation_string":"UNSW, Australia","institution_ids":["https://openalex.org/I31746571"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061545147","display_name":"S\u00e9an O\u2019Donoghue","orcid":"https://orcid.org/0000-0001-9520-6623"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"funder","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sean O'Donoghue","raw_affiliation_strings":["CSIRO, Australia","Garvan Institute of Medical Research, Australia"],"affiliations":[{"raw_affiliation_string":"CSIRO, Australia","institution_ids":["https://openalex.org/I1292875679"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Australia","institution_ids":["https://openalex.org/I136750679"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5102872139"],"corresponding_institution_ids":["https://openalex.org/I1292875679"],"apc_list":null,"apc_paid":null,"fwci":0.1361,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.45450678,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.902999997138977,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.902999997138977,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6820035576820374},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.6401774883270264},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4479222595691681},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.06964343786239624}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6820035576820374},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.6401774883270264},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4479222595691681},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.06964343786239624},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bdva.2015.7314292","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bdva.2015.7314292","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 Big Data Visual Analytics (BDVA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6399999856948853}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320386","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1533371356","https://openalex.org/W1769633499","https://openalex.org/W1965112674","https://openalex.org/W1968993423","https://openalex.org/W1976079746","https://openalex.org/W1987931295","https://openalex.org/W2002357891","https://openalex.org/W2031331868","https://openalex.org/W2043359500","https://openalex.org/W2058199791","https://openalex.org/W2117470435","https://openalex.org/W2130479394","https://openalex.org/W2267499985","https://openalex.org/W2605068739","https://openalex.org/W6642422475","https://openalex.org/W6693700020"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"We":[0],"investigated":[1],"the":[2,65,75,100],"effectiveness":[3],"of":[4,39,67,74,80,93,96],"colormapping":[5],"as":[6],"a":[7,23,37,49,62,87,97],"means":[8],"to":[9,27],"convey":[10],"uncertainty":[11],"in":[12,64,104],"sequence-to-structure":[13],"align-":[14],"ments":[15],"for":[16,36],"proteins.":[17],"To":[18,44],"this":[19,45,81],"end,":[20,46],"we":[21,47],"evaluate":[22],"color":[24],"modulation":[25],"scheme":[26],"encode":[28],"residue":[29],"conservation":[30],"by":[31],"collecting":[32],"human":[33,91],"preference":[34,63,92],"data":[35],"set":[38],"structures":[40],"and":[41,99],"alignment":[42,72,101],"qualities.":[43],"conducted":[48],"user":[50],"study":[51,82],"on":[52],"Amazon":[53],"Mechanical":[54],"Turk":[55],"with":[56],"more":[57],"than":[58],"40":[59],"participants":[60],"expressing":[61],"choice":[66],"two":[68],"images":[69],"encoding":[70],"different":[71],"qualities":[73],"same":[76],"structure.":[77],"The":[78],"results":[79],"suggest":[83],"that":[84,105],"there":[85],"is":[86],"strong":[88],"correlation":[89],"between":[90],"an":[94],"image":[95],"structure":[98],"quality":[102],"encoded":[103],"image.":[106]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
