{"id":"https://openalex.org/W2288797465","doi":"https://doi.org/10.1109/apsipa.2015.7415512","title":"A novel DNA sequence compression scheme using both intra and inter sequences correlation","display_name":"A novel DNA sequence compression scheme using both intra and inter sequences correlation","publication_year":2015,"publication_date":"2015-12-01","ids":{"openalex":"https://openalex.org/W2288797465","doi":"https://doi.org/10.1109/apsipa.2015.7415512","mag":"2288797465"},"language":"en","primary_location":{"id":"doi:10.1109/apsipa.2015.7415512","is_oa":false,"landing_page_url":"https://doi.org/10.1109/apsipa.2015.7415512","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 Asia-Pacific Signal and Information Processing Association Annual Summit and Conference (APSIPA)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044457898","display_name":"K.O. Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"K. O. Cheng","raw_affiliation_strings":["Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016890310","display_name":"Ngai-Fong Law","orcid":"https://orcid.org/0000-0002-9809-5110"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"N. F. Law","raw_affiliation_strings":["Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083042979","display_name":"Wan-Chi Siu","orcid":"https://orcid.org/0000-0001-8280-0367"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"W. C. Siu","raw_affiliation_strings":["Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong","institution_ids":["https://openalex.org/I14243506"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I14243506"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14204983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":null,"first_page":"237","last_page":"241"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.760648250579834},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5511127710342407},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.533440887928009},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5067117810249329},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.47631797194480896},{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.46936681866645813},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.46872010827064514},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4362049996852875},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4284396171569824},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4075120687484741},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3479955196380615},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3342237174510956},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3209773898124695},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30499136447906494},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20352739095687866},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1239229142665863},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1214425265789032}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.760648250579834},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5511127710342407},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.533440887928009},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5067117810249329},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.47631797194480896},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.46936681866645813},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.46872010827064514},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4362049996852875},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4284396171569824},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4075120687484741},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3479955196380615},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3342237174510956},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3209773898124695},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30499136447906494},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20352739095687866},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1239229142665863},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1214425265789032},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/apsipa.2015.7415512","is_oa":false,"landing_page_url":"https://doi.org/10.1109/apsipa.2015.7415512","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 Asia-Pacific Signal and Information Processing Association Annual Summit and Conference (APSIPA)","raw_type":"proceedings-article"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/67644","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/67644","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322170","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86"},{"id":"https://openalex.org/F4320322598","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98"},{"id":"https://openalex.org/F4320329815","display_name":"Hong Kong Government","ror":"https://ror.org/034179816"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W153132339","https://openalex.org/W1528514765","https://openalex.org/W1970231722","https://openalex.org/W1987059623","https://openalex.org/W1998127289","https://openalex.org/W2012680439","https://openalex.org/W2072021854","https://openalex.org/W2097270560","https://openalex.org/W2110553099","https://openalex.org/W2117441377","https://openalex.org/W2128591967","https://openalex.org/W2128777897","https://openalex.org/W2135864272","https://openalex.org/W2137892587","https://openalex.org/W2143073091","https://openalex.org/W2147492358","https://openalex.org/W6606157611","https://openalex.org/W6679873336"],"related_works":["https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W2012019886","https://openalex.org/W2166090428","https://openalex.org/W2381021552","https://openalex.org/W2354749003","https://openalex.org/W2377121353","https://openalex.org/W2350529538","https://openalex.org/W2612632602","https://openalex.org/W2321805087"],"abstract_inverted_index":{"Classical":[0],"DNA":[1,14,43],"sequence":[2,15,44],"compression":[3],"algorithms":[4],"consider":[5],"only":[6],"intra-sequence":[7,28],"similarity,":[8,29],"i.e.,":[9],"similar":[10,37,54,62,91,96],"subsequences":[11,38],"within":[12,41],"the":[13,27,32,42,57,66,75,82],"are":[16,39],"found":[17,40],"and":[18,94],"encoded":[19],"together.":[20],"In":[21],"this":[22],"work,":[23],"in":[24,35],"addition":[25],"to":[26,73],"we":[30],"exploit":[31],"inter-sequence":[33],"similarities":[34],"that":[36,81],"as":[45,47],"well":[46],"from":[48,56],"other":[49],"reference":[50],"sequences.":[51,98],"Hence,":[52],"highly":[53,95],"sequences":[55,64,93],"same":[58,67],"population":[59,97],"or":[60],"partially":[61,90],"chromosome":[63,92],"of":[65],"species":[68],"can":[69],"be":[70],"compressed":[71],"together":[72],"reduce":[74],"storage":[76],"space.":[77],"Experimental":[78],"results":[79],"show":[80],"proposed":[83],"scheme":[84],"achieves":[85],"good":[86],"compressibility":[87],"for":[88],"both":[89]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
