{"id":"https://openalex.org/W1983644252","doi":"https://doi.org/10.1109/allerton.2012.6483391","title":"A novel application of mixing coefficients for reverse-engineering gene interaction networks","display_name":"A novel application of mixing coefficients for reverse-engineering gene interaction networks","publication_year":2012,"publication_date":"2012-10-01","ids":{"openalex":"https://openalex.org/W1983644252","doi":"https://doi.org/10.1109/allerton.2012.6483391","mag":"1983644252"},"language":"en","primary_location":{"id":"doi:10.1109/allerton.2012.6483391","is_oa":false,"landing_page_url":"https://doi.org/10.1109/allerton.2012.6483391","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 50th Annual Allerton Conference on Communication, Control, and Computing (Allerton)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/1264194","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004469409","display_name":"Nitin K. Singh","orcid":"https://orcid.org/0000-0001-5344-1190"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nitin Singh","raw_affiliation_strings":["Bioengineering Department, University of Texas at Dallas, Richardson, TX, USA","Bioengineering Department, University of Texas at Dallas, Richardson, TX 75080"],"affiliations":[{"raw_affiliation_string":"Bioengineering Department, University of Texas at Dallas, Richardson, TX, USA","institution_ids":["https://openalex.org/I162577319"]},{"raw_affiliation_string":"Bioengineering Department, University of Texas at Dallas, Richardson, TX 75080","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030913634","display_name":"Mehmet Eren Ahsen","orcid":"https://orcid.org/0000-0002-4907-0427"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Eren Ahsen","raw_affiliation_strings":["Bioengineering Department, University of Texas at Dallas, Richardson, TX, USA","Bioengineering Department, University of Texas at Dallas, Richardson, TX 75080"],"affiliations":[{"raw_affiliation_string":"Bioengineering Department, University of Texas at Dallas, Richardson, TX, USA","institution_ids":["https://openalex.org/I162577319"]},{"raw_affiliation_string":"Bioengineering Department, University of Texas at Dallas, Richardson, TX 75080","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016013068","display_name":"Shiva Mankala","orcid":null},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiva Mankala","raw_affiliation_strings":["Bioengineering Department, University of Texas at Dallas, Richardson, TX, USA","Bioengineering Department, University of Texas at Dallas, Richardson, TX 75080"],"affiliations":[{"raw_affiliation_string":"Bioengineering Department, University of Texas at Dallas, Richardson, TX, USA","institution_ids":["https://openalex.org/I162577319"]},{"raw_affiliation_string":"Bioengineering Department, University of Texas at Dallas, Richardson, TX 75080","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089027398","display_name":"M. Vidyasagar","orcid":"https://orcid.org/0000-0003-1057-1942"},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Vidyasagar","raw_affiliation_strings":["Bioengineering Department, University of Texas at Dallas, Richardson, TX, USA","Bioengineering Department, University of Texas at Dallas, Richardson, TX 75080"],"affiliations":[{"raw_affiliation_string":"Bioengineering Department, University of Texas at Dallas, Richardson, TX, USA","institution_ids":["https://openalex.org/I162577319"]},{"raw_affiliation_string":"Bioengineering Department, University of Texas at Dallas, Richardson, TX 75080","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088421747","display_name":"Michael A. White","orcid":"https://orcid.org/0000-0001-6772-1388"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"education","lineage":["https://openalex.org/I867280407"]},{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I4210096815","display_name":"Southwestern Medical Center","ror":"https://ror.org/00t9vx427","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210096815"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael A. White","raw_affiliation_strings":["Cell Biology Department, UT Southwestern Medical Center at Dallas, Dallas, USA","Cell Biology Department, UT Southwestern Medical Center, Dallas 75390"],"affiliations":[{"raw_affiliation_string":"Cell Biology Department, UT Southwestern Medical Center at Dallas, Dallas, USA","institution_ids":["https://openalex.org/I4210096815","https://openalex.org/I867280407","https://openalex.org/I4388891891"]},{"raw_affiliation_string":"Cell Biology Department, UT Southwestern Medical Center, Dallas 75390","institution_ids":["https://openalex.org/I867280407","https://openalex.org/I4388891891"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5004469409"],"corresponding_institution_ids":["https://openalex.org/I162577319"],"apc_list":null,"apc_paid":null,"fwci":0.2684,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.56794701,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"303","issue":null,"first_page":"1461","last_page":"1466"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mixing","display_name":"Mixing (physics)","score":0.8163371682167053},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.5350040197372437},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5336018204689026},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4978759288787842},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.45994800329208374},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4210279881954193},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4209921956062317},{"id":"https://openalex.org/keywords/random-variable","display_name":"Random variable","score":0.42051222920417786},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.31998446583747864},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.20422175526618958},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.14847445487976074}],"concepts":[{"id":"https://openalex.org/C138777275","wikidata":"https://www.wikidata.org/wiki/Q6884054","display_name":"Mixing (physics)","level":2,"score":0.8163371682167053},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.5350040197372437},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5336018204689026},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4978759288787842},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.45994800329208374},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4210279881954193},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4209921956062317},{"id":"https://openalex.org/C122123141","wikidata":"https://www.wikidata.org/wiki/Q176623","display_name":"Random variable","level":2,"score":0.42051222920417786},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.31998446583747864},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.20422175526618958},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14847445487976074},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/allerton.2012.6483391","is_oa":false,"landing_page_url":"https://doi.org/10.1109/allerton.2012.6483391","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 50th Annual Allerton Conference on Communication, Control, and Computing (Allerton)","raw_type":"proceedings-article"},{"id":"pmh:oai:zenodo.org:1264194","is_oa":true,"landing_page_url":"https://zenodo.org/record/1264194","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:1264194","is_oa":true,"landing_page_url":"https://zenodo.org/record/1264194","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1482196458","https://openalex.org/W1511986666","https://openalex.org/W1965032353","https://openalex.org/W1979594866","https://openalex.org/W1980362252","https://openalex.org/W1997292480","https://openalex.org/W2047515295","https://openalex.org/W2054416990","https://openalex.org/W2076372398","https://openalex.org/W2078149659","https://openalex.org/W2081172240","https://openalex.org/W2086426115","https://openalex.org/W2125631472","https://openalex.org/W2154454113","https://openalex.org/W2230939080","https://openalex.org/W2479575276","https://openalex.org/W2611370172","https://openalex.org/W2964335458"],"related_works":["https://openalex.org/W2363831530","https://openalex.org/W2363845219","https://openalex.org/W2381057835","https://openalex.org/W1789649838","https://openalex.org/W2051831113","https://openalex.org/W1984362519","https://openalex.org/W2362738525","https://openalex.org/W1616281264","https://openalex.org/W2350923288","https://openalex.org/W2371005633"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,35],"present":[4,36],"a":[5,37],"new":[6,38],"application":[7],"of":[8,26,54,94,114,128],"the":[9,18,27,51,64,68,87,92,95,115,126],"so-called":[10],"phi-mixing":[11,19],"coefficient":[12],"between":[13,97],"two":[14],"random":[15,59],"variables.":[16,60],"Using":[17],"coefficient,":[20],"as":[21,23,57,89,91],"well":[22,90],"an":[24],"analog":[25],"well-known":[28],"data":[29,106],"processing":[30],"inequality":[31],"from":[32,46],"information":[33],"theory,":[34],"algorithm":[39,69],"for":[40,104],"reverse-engineering":[41],"gene":[42],"interaction":[43,96],"networks":[44,118],"(GINs)":[45],"expression":[47,52],"data,":[48],"by":[49,121],"viewing":[50],"levels":[53],"various":[55,105],"genes":[56],"coupled":[58],"Unlike":[61],"existing":[62],"methods,":[63],"GINs":[65,100],"constructed":[66,103],"using":[67],"presented":[70],"here":[71],"have":[72,101],"edges":[73],"that":[74],"are":[75],"both":[76,86],"directed":[77],"and":[78,110],"weighted.":[79],"Thus":[80],"it":[81],"is":[82,119],"possible":[83],"to":[84],"infer":[85],"direction":[88],"strength":[93],"genes.":[98],"Several":[99],"been":[102],"sets":[107],"in":[108],"lung":[109,116],"ovarian":[111],"cancer.":[112],"One":[113],"cancer":[117],"validated":[120],"comparing":[122],"its":[123],"predictions":[124],"against":[125],"output":[127],"ChIP-seq":[129],"data.":[130]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
