{"id":"https://openalex.org/W4393407129","doi":"https://doi.org/10.1109/aiccsa59173.2023.10479233","title":"Leveraging Nucleotide Dependencies for Improved mRNA Vaccine Degradation Prediction","display_name":"Leveraging Nucleotide Dependencies for Improved mRNA Vaccine Degradation Prediction","publication_year":2023,"publication_date":"2023-12-04","ids":{"openalex":"https://openalex.org/W4393407129","doi":"https://doi.org/10.1109/aiccsa59173.2023.10479233"},"language":"en","primary_location":{"id":"doi:10.1109/aiccsa59173.2023.10479233","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/aiccsa59173.2023.10479233","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 20th ACS/IEEE International Conference on Computer Systems and Applications (AICCSA)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035177276","display_name":"Kadhim Hayawi","orcid":"https://orcid.org/0000-0002-8092-4590"},"institutions":[{"id":"https://openalex.org/I91044093","display_name":"Zayed University","ror":"https://ror.org/03snqfa66","country_code":"AE","type":"education","lineage":["https://openalex.org/I91044093"]}],"countries":["AE"],"is_corresponding":true,"raw_author_name":"Kadhim Hayawi","raw_affiliation_strings":["Zayed University,College of Interdisciplinary Studies, Computational Systems,Abu Dhabi,United Arab Emirates","College of Interdisciplinary Studies, Computational Systems, Zayed University, Abu Dhabi, United Arab Emirates"],"affiliations":[{"raw_affiliation_string":"Zayed University,College of Interdisciplinary Studies, Computational Systems,Abu Dhabi,United Arab Emirates","institution_ids":["https://openalex.org/I91044093"]},{"raw_affiliation_string":"College of Interdisciplinary Studies, Computational Systems, Zayed University, Abu Dhabi, United Arab Emirates","institution_ids":["https://openalex.org/I91044093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040754771","display_name":"Sakib Shahriar","orcid":"https://orcid.org/0000-0002-5778-4876"},"institutions":[{"id":"https://openalex.org/I79817857","display_name":"University of Guelph","ror":"https://ror.org/01r7awg59","country_code":"CA","type":"education","lineage":["https://openalex.org/I79817857"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sakib Shahriar","raw_affiliation_strings":["University of Guelph,School of Computer Science,Guelph,Canada","School of Computer Science, University of Guelph, Guelph, Canada"],"affiliations":[{"raw_affiliation_string":"University of Guelph,School of Computer Science,Guelph,Canada","institution_ids":["https://openalex.org/I79817857"]},{"raw_affiliation_string":"School of Computer Science, University of Guelph, Guelph, Canada","institution_ids":["https://openalex.org/I79817857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016064500","display_name":"Hany Alashwal","orcid":"https://orcid.org/0000-0002-5721-5104"},"institutions":[{"id":"https://openalex.org/I201726411","display_name":"United Arab Emirates University","ror":"https://ror.org/01km6p862","country_code":"AE","type":"education","lineage":["https://openalex.org/I201726411"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Hany Alashwal","raw_affiliation_strings":["United Arab Emirates University,College of Information Technology,Al Ain,United Arab Emirates","College of Information Technology, United Arab Emirates University, Al Ain, United Arab Emirates"],"affiliations":[{"raw_affiliation_string":"United Arab Emirates University,College of Information Technology,Al Ain,United Arab Emirates","institution_ids":["https://openalex.org/I201726411"]},{"raw_affiliation_string":"College of Information Technology, United Arab Emirates University, Al Ain, United Arab Emirates","institution_ids":["https://openalex.org/I201726411"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5035177276"],"corresponding_institution_ids":["https://openalex.org/I91044093"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.35784668,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11663","display_name":"Viral Infectious Diseases and Gene Expression in Insects","score":0.9664999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9567999839782715,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/degradation","display_name":"Degradation (telecommunications)","score":0.6992515921592712},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5183969140052795},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.4247969090938568},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41764071583747864},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2043074667453766},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16989031434059143},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1091795563697815},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.09810838103294373}],"concepts":[{"id":"https://openalex.org/C2779679103","wikidata":"https://www.wikidata.org/wiki/Q5251805","display_name":"Degradation (telecommunications)","level":2,"score":0.6992515921592712},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5183969140052795},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.4247969090938568},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41764071583747864},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2043074667453766},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16989031434059143},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1091795563697815},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.09810838103294373}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/aiccsa59173.2023.10479233","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/aiccsa59173.2023.10479233","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 20th ACS/IEEE International Conference on Computer Systems and Applications (AICCSA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.699999988079071}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1951403192","https://openalex.org/W2295598076","https://openalex.org/W2782708334","https://openalex.org/W2971270198","https://openalex.org/W2990528340","https://openalex.org/W3086833944","https://openalex.org/W3108894477","https://openalex.org/W3110973116","https://openalex.org/W3152639260","https://openalex.org/W3175714782","https://openalex.org/W3177828909","https://openalex.org/W3204915352","https://openalex.org/W3207022909","https://openalex.org/W3213414996","https://openalex.org/W4205601414","https://openalex.org/W4308293505","https://openalex.org/W4313338978","https://openalex.org/W4366829432","https://openalex.org/W6631190155","https://openalex.org/W6802249972"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"RNA":[0,8,129,142,150],"sequence":[1,130],"properties":[2],"prediction":[3],"is":[4,57],"significant":[5,139],"for":[6,66,102,119,141],"understanding":[7,149],"function":[9,151],"and":[10,16,45,83,100,105,124,152,158],"its":[11],"potential":[12],"applications":[13],"in":[14,148],"medicine":[15],"biotechnology.":[17],"In":[18],"this":[19,136],"study,":[20],"we":[21],"developed":[22],"a":[23,90,116],"novel":[24],"Gated":[25],"Recurrent":[26],"Unit":[27],"(GRU)":[28],"deep":[29,48],"learning":[30,43,49],"model":[31,78,114],"to":[32,122,146],"predict":[33],"mRNA":[34],"vaccine":[35],"degradation":[36],"with":[37],"improved":[38],"accuracy":[39],"over":[40],"traditional":[41],"machine":[42],"methods":[44],"previously":[46],"reported":[47],"approaches.":[50],"A":[51],"notable":[52],"contribution":[53],"of":[54,61,98,128,135,155],"our":[55,113],"approach":[56],"the":[58,72,103,106,126,153],"innovative":[59],"method":[60],"feature":[62,73],"engineering":[63],"that":[64],"accounts":[65],"dependencies":[67],"between":[68],"nucleotides":[69],"by":[70],"shifting":[71],"values.":[74],"Our":[75],"proposed":[76],"GRU":[77,87],"outperformed":[79],"XGBoost,":[80],"Random":[81],"Forest,":[82],"LightGBM":[84],"models.":[85],"The":[86,133],"Network":[88],"showed":[89],"Mean":[91,94],"Columnwise":[92],"Root":[93],"Squared":[95],"Error":[96],"(MCRMSE)":[97],"0.275":[99],"0.389":[101],"public":[104],"private":[107],"sets,":[108],"respectively.":[109],"Despite":[110],"some":[111],"limitations,":[112],"provides":[115],"strong":[117],"foundation":[118],"future":[120],"work":[121],"refine":[123],"expand":[125],"capabilities":[127],"property":[131],"prediction.":[132],"results":[134],"study":[137],"have":[138],"implications":[140],"research,":[143],"potentially":[144],"leading":[145],"advancements":[147],"development":[154],"RNA-targeting":[156],"therapeutics":[157],"diagnostic":[159],"tools.":[160]},"counts_by_year":[],"updated_date":"2025-12-22T23:10:17.713674","created_date":"2025-10-10T00:00:00"}
