{"id":"https://openalex.org/W2046386390","doi":"https://doi.org/10.1109/aiccsa.2013.6616452","title":"Parallelizing bioinformatics and security applications on a low-cost multi-core system","display_name":"Parallelizing bioinformatics and security applications on a low-cost multi-core system","publication_year":2013,"publication_date":"2013-05-01","ids":{"openalex":"https://openalex.org/W2046386390","doi":"https://doi.org/10.1109/aiccsa.2013.6616452","mag":"2046386390"},"language":"en","primary_location":{"id":"doi:10.1109/aiccsa.2013.6616452","is_oa":false,"landing_page_url":"https://doi.org/10.1109/aiccsa.2013.6616452","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 ACS International Conference on Computer Systems and Applications (AICCSA)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043676071","display_name":"Teodor Tzanoudakis","orcid":null},"institutions":[{"id":"https://openalex.org/I55741626","display_name":"Technical University of Crete","ror":"https://ror.org/03f8bz564","country_code":"GR","type":"education","lineage":["https://openalex.org/I55741626"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Teodor Tzanoudakis","raw_affiliation_strings":["Electronic & Computer Engineering Department Microprocessor and Hardware Laboratory, Technical University of Crete, Crete, Greece","[Electron. & Comput. Eng. Dept., Tech. Univ. of Crete, Chania, Greece]"],"affiliations":[{"raw_affiliation_string":"Electronic & Computer Engineering Department Microprocessor and Hardware Laboratory, Technical University of Crete, Crete, Greece","institution_ids":["https://openalex.org/I55741626"]},{"raw_affiliation_string":"[Electron. & Comput. Eng. Dept., Tech. Univ. of Crete, Chania, Greece]","institution_ids":["https://openalex.org/I55741626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032739499","display_name":"Ioannis Papaefstathiou","orcid":"https://orcid.org/0000-0001-6386-5616"},"institutions":[{"id":"https://openalex.org/I55741626","display_name":"Technical University of Crete","ror":"https://ror.org/03f8bz564","country_code":"GR","type":"education","lineage":["https://openalex.org/I55741626"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Ioannis Papaefstathiou","raw_affiliation_strings":["Electronic & Computer Engineering Department Microprocessor and Hardware Laboratory, Technical University of Crete, Crete, Greece","[Electron. & Comput. Eng. Dept., Tech. Univ. of Crete, Chania, Greece]"],"affiliations":[{"raw_affiliation_string":"Electronic & Computer Engineering Department Microprocessor and Hardware Laboratory, Technical University of Crete, Crete, Greece","institution_ids":["https://openalex.org/I55741626"]},{"raw_affiliation_string":"[Electron. & Comput. Eng. Dept., Tech. Univ. of Crete, Chania, Greece]","institution_ids":["https://openalex.org/I55741626"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5106083747","display_name":"Charalampos Manifavas","orcid":null},"institutions":[{"id":"https://openalex.org/I28710699","display_name":"Hellenic Mediterranean University","ror":"https://ror.org/039ce0m20","country_code":"GR","type":"education","lineage":["https://openalex.org/I28710699"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Charalampos Manifavas","raw_affiliation_strings":["Applied Informatics & Multimedia Department, Technological Educational Institute of Crete, Crete, Greece","Appl. Inf. & Multimedia Dept., Technol. Educ. Inst. of Crete, Heraklion, Greece"],"affiliations":[{"raw_affiliation_string":"Applied Informatics & Multimedia Department, Technological Educational Institute of Crete, Crete, Greece","institution_ids":["https://openalex.org/I28710699"]},{"raw_affiliation_string":"Appl. Inf. & Multimedia Dept., Technol. Educ. Inst. of Crete, Heraklion, Greece","institution_ids":["https://openalex.org/I28710699"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5043676071"],"corresponding_institution_ids":["https://openalex.org/I55741626"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.07210432,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9377999901771545,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9377999901771545,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9311000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9088000059127808,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8309759497642517},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.5149205923080444}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8309759497642517},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.5149205923080444},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/aiccsa.2013.6616452","is_oa":false,"landing_page_url":"https://doi.org/10.1109/aiccsa.2013.6616452","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 ACS International Conference on Computer Systems and Applications (AICCSA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.8299999833106995,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W2060321634"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Utilizing":[0],"multi-cores":[1],"is":[2,77,143],"now":[3],"the":[4,19,38,42,45,56,74,80,87,127,131,138,147,151,156],"norm":[5],"in":[6,71],"order":[7],"to":[8,17,50,65,165,190,195],"increase":[9],"performance":[10],"while":[11,31],"also":[12,171],"saving":[13],"energy.":[14],"The":[15],"need":[16,189],"break":[18],"physical":[20],"limits":[21],"of":[22,58,89,150],"uniprocessing":[23],"(by":[24],"branch":[25],"prediction":[26],"or":[27,100],"RAW":[28],"dependencies":[29],"etc.)":[30],"being":[32,163],"cost":[33],"and":[34,47,70,133],"power":[35],"effective":[36],"at":[37],"same":[39],"time":[40],"were":[41],"motivation":[43],"for":[44,97,129,186],"scientific":[46],"industrial":[48],"communities":[49],"focus":[51,136],"on":[52,114,137],"multi-processor":[53],"architectures.":[54],"However,":[55],"parallelization":[57,88],"existing":[59],"applications":[60,132],"has":[61],"very":[62,120],"frequently":[63],"proved":[64],"be":[66],"a":[67,107,115,119,184,196],"cumbersome":[68],"task":[69],"many":[72],"cases":[73],"parallel":[75,197],"application":[76,93,110,142],"slower":[78],"than":[79,167],"original":[81],"serial":[82,193],"one.":[83],"This":[84],"work":[85],"demonstrates":[86],"one":[90,168],"high-end":[91],"bioinformatics":[92],"(multiple":[94],"sequence":[95],"alignment":[96],"amino":[98],"acids":[99],"nucleotide":[101],"sequences":[102],"\"MAFFT\")":[103],"as":[104,106,183],"well":[105],"novel":[108],"security":[109],"(fingerprinting":[111],"recognition":[112],"\"NBIS\")":[113],"highly":[116],"parallel,":[117],"yet":[118],"low":[121],"cost,":[122],"system.":[123],"We":[124,176],"initially":[125],"demonstrate":[126,172],"method":[128],"parallelizing":[130],"then":[134],"we":[135,170],"end":[139],"performance.":[140],"One":[141],"significantly":[144],"accelerated":[145],"when":[146,162],"7":[148],"cores":[149],"system":[152],"are":[153],"utilized":[154],"whereas":[155],"other":[157],"cannot":[158],"get":[159],"any":[160],"gain":[161],"ported":[164],"more":[166],"cores;":[169],"certain":[173],"optimization":[174],"techniques.":[175],"believe":[177],"that":[178,188],"this":[179],"paper":[180],"can":[181],"act":[182],"guideline":[185],"programmers":[187],"port":[191],"their":[192],"code":[194],"machine.":[198]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
