{"id":"https://openalex.org/W4313549133","doi":"https://doi.org/10.1109/acit57182.2022.9994198","title":"An In-Silico Technique: Prediction of Unknown Protein Structure from Sequences by Homology","display_name":"An In-Silico Technique: Prediction of Unknown Protein Structure from Sequences by Homology","publication_year":2022,"publication_date":"2022-11-22","ids":{"openalex":"https://openalex.org/W4313549133","doi":"https://doi.org/10.1109/acit57182.2022.9994198"},"language":"en","primary_location":{"id":"doi:10.1109/acit57182.2022.9994198","is_oa":false,"landing_page_url":"https://doi.org/10.1109/acit57182.2022.9994198","pdf_url":null,"source":{"id":"https://openalex.org/S4363608405","display_name":"2022 International Arab Conference on Information Technology (ACIT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 International Arab Conference on Information Technology (ACIT)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010237270","display_name":"Wafa Faisal","orcid":null},"institutions":[{"id":"https://openalex.org/I9353105","display_name":"Sudan University of Science and Technology","ror":"https://ror.org/02fwtg066","country_code":"SD","type":"education","lineage":["https://openalex.org/I9353105"]}],"countries":["SD"],"is_corresponding":true,"raw_author_name":"Wafa Faisal","raw_affiliation_strings":["Sudan University of Science and Technology,Faculty of Computer Science and Information Technology,Khartoum,Sudan","Faculty of Computer Science and Information Technology, Sudan University of Science and Technology, Khartoum, Sudan"],"affiliations":[{"raw_affiliation_string":"Sudan University of Science and Technology,Faculty of Computer Science and Information Technology,Khartoum,Sudan","institution_ids":["https://openalex.org/I9353105"]},{"raw_affiliation_string":"Faculty of Computer Science and Information Technology, Sudan University of Science and Technology, Khartoum, Sudan","institution_ids":["https://openalex.org/I9353105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104101913","display_name":"Hana Eltayeb","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092510","display_name":"National University","ror":"https://ror.org/003r3cg42","country_code":"SD","type":"education","lineage":["https://openalex.org/I4210092510"]}],"countries":["SD"],"is_corresponding":false,"raw_author_name":"Hana Eltayeb","raw_affiliation_strings":["National University Biomedical Research Institute National University,Khartoum,Sudan","National University Biomedical Research Institute National University, Khartoum, Sudan"],"affiliations":[{"raw_affiliation_string":"National University Biomedical Research Institute National University,Khartoum,Sudan","institution_ids":["https://openalex.org/I4210092510"]},{"raw_affiliation_string":"National University Biomedical Research Institute National University, Khartoum, Sudan","institution_ids":["https://openalex.org/I4210092510"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100643883","display_name":"Md. Imtaiyaz Hassan","orcid":"https://orcid.org/0000-0002-3663-4940"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mohammed Hassan","raw_affiliation_strings":["7Vision Training and Development Center,Department of Biology and Bioinformatics&#x0027;,Khartoum,Sudan"],"affiliations":[{"raw_affiliation_string":"7Vision Training and Development Center,Department of Biology and Bioinformatics&#x0027;,Khartoum,Sudan","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043741267","display_name":"Nusiba Ibrahim","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092510","display_name":"National University","ror":"https://ror.org/003r3cg42","country_code":"SD","type":"education","lineage":["https://openalex.org/I4210092510"]}],"countries":["SD"],"is_corresponding":false,"raw_author_name":"Nusiba Ibrahim","raw_affiliation_strings":["National University Biomedical Research Institute National University,Khartoum,Sudan","National University Biomedical Research Institute National University, Khartoum, Sudan"],"affiliations":[{"raw_affiliation_string":"National University Biomedical Research Institute National University,Khartoum,Sudan","institution_ids":["https://openalex.org/I4210092510"]},{"raw_affiliation_string":"National University Biomedical Research Institute National University, Khartoum, Sudan","institution_ids":["https://openalex.org/I4210092510"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010237270"],"corresponding_institution_ids":["https://openalex.org/I9353105"],"apc_list":null,"apc_paid":null,"fwci":0.4411,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6471519,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8616943359375},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.7097190618515015},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.679925262928009},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.668658435344696},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6278099417686462},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5856925249099731},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.5753880739212036},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5708544850349426},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.5457559823989868},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.543727695941925},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.523765504360199},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.5082809329032898},{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.4515208899974823},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4266752302646637},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32615047693252563},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3149920403957367},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19873788952827454},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16530907154083252},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.1405661404132843},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.0911296010017395},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08482888340950012}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8616943359375},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.7097190618515015},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.679925262928009},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.668658435344696},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6278099417686462},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5856925249099731},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.5753880739212036},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5708544850349426},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.5457559823989868},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.543727695941925},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.523765504360199},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.5082809329032898},{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.4515208899974823},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4266752302646637},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32615047693252563},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3149920403957367},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19873788952827454},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16530907154083252},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.1405661404132843},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0911296010017395},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08482888340950012},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/acit57182.2022.9994198","is_oa":false,"landing_page_url":"https://doi.org/10.1109/acit57182.2022.9994198","pdf_url":null,"source":{"id":"https://openalex.org/S4363608405","display_name":"2022 International Arab Conference on Information Technology (ACIT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 International Arab Conference on Information Technology (ACIT)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W2804822363","https://openalex.org/W3007654924","https://openalex.org/W3031472261","https://openalex.org/W3046723549","https://openalex.org/W3093474416","https://openalex.org/W3116273722","https://openalex.org/W3116897575","https://openalex.org/W3123997054","https://openalex.org/W3138377373","https://openalex.org/W3171039768","https://openalex.org/W3189053267","https://openalex.org/W3212854871","https://openalex.org/W4220840971","https://openalex.org/W4221064798","https://openalex.org/W4224076888","https://openalex.org/W4256012060","https://openalex.org/W4288068292","https://openalex.org/W4307111654"],"related_works":["https://openalex.org/W2139373949","https://openalex.org/W2121688928","https://openalex.org/W4375844720","https://openalex.org/W3183750506","https://openalex.org/W2081601977","https://openalex.org/W2149956483","https://openalex.org/W4313549133","https://openalex.org/W2914683641","https://openalex.org/W2316191393","https://openalex.org/W2661528537"],"abstract_inverted_index":{"The":[0],"structural":[1],"characterization":[2],"of":[3,8,26,47,54,64],"protein":[4,48],"sequences":[5],"is":[6,17],"one":[7],"the":[9,21,27,38,120,128],"most":[10,39],"common":[11],"problems":[12],"in":[13],"biology.":[14],"This":[15,29,83],"task":[16],"usually":[18],"facilitated":[19],"by":[20,50],"accurate":[22],"Three-Dimensional":[23],"(3-D)":[24,61,112],"structure":[25,49,113,125],"protein.":[28],"paper":[30,84],"was":[31,114,126],"carried":[32],"out":[33],"to":[34,123],"investigate":[35],"and":[36,59,66,94,99,104,119],"compare":[37],"suitable":[40],"software":[41,130],"online":[42,131],"tools":[43],"for":[44,96,127],"homology":[45],"modeling":[46],"obtaining":[51],"few":[52],"samples":[53],"proteins.":[55],"Different":[56],"length,":[57],"known":[58],"unknown":[60],"proteins":[62,124],"structures":[63],"bacteria,":[65],"viruses":[67],"were":[68],"obtained":[69],"from":[70],"Uniprot":[71],"which":[72],"do":[73],"not":[74],"have":[75],"a":[76],"Protein":[77],"Data":[78],"Bank":[79],"Identifier":[80],"(PDB":[81],"ID).":[82],"used":[85],"several":[86],"tools,":[87],"such":[88],"CPHmodels-3.2,":[89],"Phyre2,":[90],"Swiss-":[91],"Model,":[92],"(PS)2-v2,":[93],"Robetta,":[95],"predicting,":[97],"comparison":[98],"model":[100],"generation,":[101],"where":[102],"CPHmodels-3.2":[103],"Phyre2":[105,129],"Server,":[106],"gave":[107],"relatively":[108],"better":[109,121],"values.":[110],"Proteins":[111],"evaluated":[115],"using":[116],"PROSESS":[117],"Server":[118],"evaluation":[122],"tool.":[132]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
