{"id":"https://openalex.org/W4413630496","doi":"https://doi.org/10.1109/access.2025.3602358","title":"ChemReservoir\u2014An Open-Source Framework for Chemically-Inspired Reservoir Computing","display_name":"ChemReservoir\u2014An Open-Source Framework for Chemically-Inspired Reservoir Computing","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4413630496","doi":"https://doi.org/10.1109/access.2025.3602358"},"language":"en","primary_location":{"id":"doi:10.1109/access.2025.3602358","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2025.3602358","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2025.3602358","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050147247","display_name":"Mehmet Aziz Yirik","orcid":"https://orcid.org/0000-0001-7520-7215"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Mehmet Aziz Yirik","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","Department of Mathematics and Computer Science, University of Southern Denmark, Campusvej 55, Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Campusvej 55, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001028353","display_name":"Jakob L. Andersen","orcid":"https://orcid.org/0000-0002-4165-3732"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jakob Lykke Andersen","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","Department of Mathematics and Computer Science, University of Southern Denmark, Campusvej 55, Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Campusvej 55, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021765002","display_name":"Rolf Fagerberg","orcid":"https://orcid.org/0000-0003-1004-3314"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Rolf Fagerberg","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","Department of Mathematics and Computer Science, University of Southern Denmark, Campusvej 55, Odense, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Campusvej 55, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078883427","display_name":"Daniel Merkle","orcid":"https://orcid.org/0000-0001-7792-375X"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Merkle","raw_affiliation_strings":["Algorithmic Cheminformatics, Faculty of Technology, Bielefeld University, Bielefeld, Germany","Algorithmic Cheminformatics, Faculty of Technology, Bielefeld University, Universit&#x00E4;tsstra&#x00DF;e 25, Bielefeld, Germany"],"affiliations":[{"raw_affiliation_string":"Algorithmic Cheminformatics, Faculty of Technology, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Algorithmic Cheminformatics, Faculty of Technology, Bielefeld University, Universit&#x00E4;tsstra&#x00DF;e 25, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5050147247"],"corresponding_institution_ids":["https://openalex.org/I177969490"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.24016854,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":null,"first_page":"149197","last_page":"149202"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11434","display_name":"Electrochemical Analysis and Applications","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1603","display_name":"Electrochemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11434","display_name":"Electrochemical Analysis and Applications","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1603","display_name":"Electrochemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.9538000226020813,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12611","display_name":"Neural Networks and Reservoir Computing","score":0.9513999819755554,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7046452164649963},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5713940858840942},{"id":"https://openalex.org/keywords/reservoir-computing","display_name":"Reservoir computing","score":0.4665966033935547},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21133160591125488},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19183340668678284},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.12160736322402954},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.08061400055885315}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7046452164649963},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5713940858840942},{"id":"https://openalex.org/C135796866","wikidata":"https://www.wikidata.org/wiki/Q7315328","display_name":"Reservoir computing","level":4,"score":0.4665966033935547},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21133160591125488},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19183340668678284},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.12160736322402954},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.08061400055885315},{"id":"https://openalex.org/C147168706","wikidata":"https://www.wikidata.org/wiki/Q1457734","display_name":"Recurrent neural network","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2025.3602358","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2025.3602358","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:sdu.dk:openaire/e84a2c4a-6a1e-49b1-9107-b84584df71d1","is_oa":true,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/e84a2c4a-6a1e-49b1-9107-b84584df71d1","pdf_url":"https://findresearcher.sdu.dk/ws/files/295444723/ChemReservoirAn_Open-Source_Framework_for_Chemically-Inspired_Reservoir_Computing.pdf","source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Yirik, M A, Andersen, J L, Fagerberg, R & Merkle, D 2025, 'ChemReservoir\u2014An Open-Source Framework for Chemically-Inspired Reservoir Computing', IEEE Access, vol. 13, pp. 149197-149202. https://doi.org/10.1109/ACCESS.2025.3602358","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:c809749feb61448eab2402b4048a2d49","is_oa":true,"landing_page_url":"https://doaj.org/article/c809749feb61448eab2402b4048a2d49","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 13, Pp 149197-149202 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2025.3602358","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2025.3602358","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2200107526","display_name":null,"funder_award_id":"22.00017","funder_id":"https://openalex.org/F4320335238","funder_display_name":"Staatssekretariat f\u00fcr Bildung, Forschung und Innovation"},{"id":"https://openalex.org/G2308879057","display_name":null,"funder_award_id":"22.00034","funder_id":"https://openalex.org/F4320335238","funder_display_name":"Staatssekretariat f\u00fcr Bildung, Forschung und Innovation"},{"id":"https://openalex.org/G6057779784","display_name":null,"funder_award_id":"22.00017","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334322","display_name":"HORIZON EUROPE Framework Programme","ror":null},{"id":"https://openalex.org/F4320335238","display_name":"Staatssekretariat f\u00fcr Bildung, Forschung und Innovation","ror":"https://ror.org/01kw63t33"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W2024529445","https://openalex.org/W2159682675","https://openalex.org/W2171865010","https://openalex.org/W2883417007","https://openalex.org/W2963912089","https://openalex.org/W2997591727","https://openalex.org/W3042528966","https://openalex.org/W4224903266","https://openalex.org/W4385322239","https://openalex.org/W4392754628","https://openalex.org/W4400038677","https://openalex.org/W4408220211"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3192662224","https://openalex.org/W4389072666","https://openalex.org/W2887258823","https://openalex.org/W4300888463","https://openalex.org/W2998821156","https://openalex.org/W2949388105","https://openalex.org/W4226454644"],"abstract_inverted_index":{"Reservoir":[0],"computing":[1],"is":[2,131],"a":[3,6,57,68,103,106,132,173],"type":[4],"of":[5,32,140,175],"recurrent":[7],"neural":[8],"network,":[9],"mapping":[10],"the":[11,26,45,84,124,136,146],"inputs":[12],"into":[13],"higher":[14],"dimensional":[15],"space":[16],"using":[17,163],"fixed":[18],"and":[19,65,88,138,157,168],"nonlinear":[20],"dynamical":[21],"systems,":[22],"called":[23],"reservoirs.":[24],"In":[25,39,121],"literature,":[27],"there":[28,101],"are":[29],"various":[30,164],"types":[31],"reservoirs":[33],"ranging":[34],"from":[35],"in-silico":[36,52],"to":[37,44,98,123],"in-vitro.":[38],"cheminformatics,":[40],"previous":[41,150],"studies":[42,126,151],"contributed":[43],"field":[46],"by":[47,152],"developing":[48],"simulation-based":[49],"chemically":[50],"inspired":[51],"reservoir":[53,64,119,166],"models.":[54],"Yahiro":[55],"used":[56],"DNA-based":[58],"chemical":[59],"reaction":[60],"network":[61],"as":[62],"its":[63],"Nguyen":[66],"developed":[67],"DNA":[69],"chemistry-inspired":[70],"tool":[71,160],"based":[72],"on":[73,86,128],"Gillespie":[74],"algorithm.":[75],"However,":[76],"these":[77,99,149],"software":[78],"tools":[79],"were":[80],"designed":[81],"mainly":[82],"with":[83],"focus":[85],"DNAchemistry":[87],"their":[89,94],"maintenance":[90],"status":[91],"has":[92],"limited":[93],"current":[95],"usability.":[96],"Due":[97],"limitations,":[100],"was":[102,161],"need":[104],"for":[105,117,135],"proper":[107],"open-source":[108,115],"tool.":[109],"This":[110],"study":[111],"introduces":[112],"ChemReservoir,":[113],"an":[114],"framework":[116,134],"chemically-inspired":[118,141],"computing.":[120],"contrast":[122],"former":[125],"focused":[127],"DNA-chemistry,":[129],"ChemReservoir":[130],"general":[133],"construction":[137],"analysis":[139],"reservoirs,":[142],"which":[143],"also":[144],"addresses":[145],"limitations":[147],"in":[148,177],"ensuring":[153],"enhanced":[154],"testing,":[155],"evaluation,":[156],"reproducibility.":[158],"The":[159],"evaluated":[162],"cycle-based":[165],"topologies":[167],"demonstrated":[169],"stable":[170],"performance":[171],"across":[172],"range":[174],"configurations":[176],"memory":[178],"capacity":[179],"tasks.":[180]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-08-26T00:00:00"}
