{"id":"https://openalex.org/W4409427540","doi":"https://doi.org/10.1109/access.2025.3560387","title":"A Dynamic Sliding Window Encoding for Secured DNA Data Storage Compliant With Biological and Indexing Constraints","display_name":"A Dynamic Sliding Window Encoding for Secured DNA Data Storage Compliant With Biological and Indexing Constraints","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4409427540","doi":"https://doi.org/10.1109/access.2025.3560387"},"language":"en","primary_location":{"id":"doi:10.1109/access.2025.3560387","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2025.3560387","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2025.3560387","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104706300","display_name":"Chlo\u00e9 Berton","orcid":"https://orcid.org/0000-0001-8792-8634"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210127572","display_name":"IMT Atlantique","ror":"https://ror.org/030hj3061","country_code":"FR","type":"education","lineage":["https://openalex.org/I205703379","https://openalex.org/I4210127572"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Chlo\u00e9 Berton","raw_affiliation_strings":["IMT Atlantique, Unite INSERM 1101 Latim, Technopole Brest-Iroise, Brest, France","Unite INSERM 1101 Latim, Technopole Brest-Iroise, IMT Atlantique, Brest, France"],"affiliations":[{"raw_affiliation_string":"IMT Atlantique, Unite INSERM 1101 Latim, Technopole Brest-Iroise, Brest, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210127572"]},{"raw_affiliation_string":"Unite INSERM 1101 Latim, Technopole Brest-Iroise, IMT Atlantique, Brest, France","institution_ids":["https://openalex.org/I4210127572","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062289182","display_name":"Gouenou Coatrieux","orcid":"https://orcid.org/0000-0002-5643-0224"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210127572","display_name":"IMT Atlantique","ror":"https://ror.org/030hj3061","country_code":"FR","type":"education","lineage":["https://openalex.org/I205703379","https://openalex.org/I4210127572"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gouenou Coatrieux","raw_affiliation_strings":["IMT Atlantique, Unite INSERM 1101 Latim, Technopole Brest-Iroise, Brest, France","Unite INSERM 1101 Latim, Technopole Brest-Iroise, IMT Atlantique, Brest, France"],"affiliations":[{"raw_affiliation_string":"IMT Atlantique, Unite INSERM 1101 Latim, Technopole Brest-Iroise, Brest, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210127572"]},{"raw_affiliation_string":"Unite INSERM 1101 Latim, Technopole Brest-Iroise, IMT Atlantique, Brest, France","institution_ids":["https://openalex.org/I4210127572","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117141123","display_name":"H\u00e9l\u00e8ne Gasnier","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210127572","display_name":"IMT Atlantique","ror":"https://ror.org/030hj3061","country_code":"FR","type":"education","lineage":["https://openalex.org/I205703379","https://openalex.org/I4210127572"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"H\u00e9l\u00e9ne Gasnier","raw_affiliation_strings":["IMT Atlantique, Unite INSERM 1101 Latim, Technopole Brest-Iroise, Brest, France","Unite INSERM 1101 Latim, Technopole Brest-Iroise, IMT Atlantique, Brest, France"],"affiliations":[{"raw_affiliation_string":"IMT Atlantique, Unite INSERM 1101 Latim, Technopole Brest-Iroise, Brest, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210127572"]},{"raw_affiliation_string":"Unite INSERM 1101 Latim, Technopole Brest-Iroise, IMT Atlantique, Brest, France","institution_ids":["https://openalex.org/I4210127572","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031146954","display_name":"Sahar Haddad","orcid":"https://orcid.org/0000-0001-5974-1266"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210114755","display_name":"Anton Proksch Institut","ror":"https://ror.org/01ym1qc81","country_code":"AT","type":"nonprofit","lineage":["https://openalex.org/I4210114755"]},{"id":"https://openalex.org/I4210161065","display_name":"Laboratoire de Traitement de l'Information M\u00e9dicale","ror":"https://ror.org/05mqemx33","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I4210105774","https://openalex.org/I4210161065"]}],"countries":["AT","FR"],"is_corresponding":false,"raw_author_name":"Sahar Haddad","raw_affiliation_strings":["Wiketio, Antony, France","Unite INSERM 1101 Latim, Brest, France"],"affiliations":[{"raw_affiliation_string":"Wiketio, Antony, France","institution_ids":["https://openalex.org/I4210114755"]},{"raw_affiliation_string":"Unite INSERM 1101 Latim, Brest, France","institution_ids":["https://openalex.org/I4210161065","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069264855","display_name":"Reda Bellafqira","orcid":"https://orcid.org/0000-0002-1131-4115"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210127572","display_name":"IMT Atlantique","ror":"https://ror.org/030hj3061","country_code":"FR","type":"education","lineage":["https://openalex.org/I205703379","https://openalex.org/I4210127572"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Reda Bellafqira","raw_affiliation_strings":["IMT Atlantique, Unite INSERM 1101 Latim, Technopole Brest-Iroise, Brest, France","Unite INSERM 1101 Latim, Technopole Brest-Iroise, IMT Atlantique, Brest, France"],"affiliations":[{"raw_affiliation_string":"IMT Atlantique, Unite INSERM 1101 Latim, Technopole Brest-Iroise, Brest, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210127572"]},{"raw_affiliation_string":"Unite INSERM 1101 Latim, Technopole Brest-Iroise, IMT Atlantique, Brest, France","institution_ids":["https://openalex.org/I4210127572","https://openalex.org/I154526488"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110454130","display_name":"Dominique Lavenier","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Dominique Lavenier","raw_affiliation_strings":["INRIA/IRISA, University of Rennes 1, Rennes, France","Univ. Rennes 1, INRIA/IRISA, Rennes, France","GenScale - Scalable, Optimized and Parallel Algorithms for Genomics (Campus de Beaulieu 35042 Rennes cedex - France)"],"affiliations":[{"raw_affiliation_string":"INRIA/IRISA, University of Rennes 1, Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I56067802","https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Univ. Rennes 1, INRIA/IRISA, Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I56067802","https://openalex.org/I1326498283"]},{"raw_affiliation_string":"GenScale - Scalable, Optimized and Parallel Algorithms for Genomics (Campus de Beaulieu 35042 Rennes cedex - France)","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5104706300"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210127572"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06503857,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":null,"first_page":"66009","last_page":"66030"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sliding-window-protocol","display_name":"Sliding window protocol","score":0.7488203644752502},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7272316217422485},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6758444309234619},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.6571794748306274},{"id":"https://openalex.org/keywords/window","display_name":"Window (computing)","score":0.5254420638084412},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18682420253753662},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10176575183868408}],"concepts":[{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.7488203644752502},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7272316217422485},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6758444309234619},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.6571794748306274},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.5254420638084412},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18682420253753662},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10176575183868408}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2025.3560387","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2025.3560387","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-05067257v1","is_oa":true,"landing_page_url":"https://hal.science/hal-05067257","pdf_url":"https://hal.science/hal-05067257/document","source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, 2025, 13, pp.66009-66030. &#x27E8;10.1109/ACCESS.2025.3560387&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:9a93d2678473465e9d5c5f4644c237ee","is_oa":true,"landing_page_url":"https://doaj.org/article/9a93d2678473465e9d5c5f4644c237ee","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 13, Pp 66009-66030 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2025.3560387","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2025.3560387","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3014825233","display_name":null,"funder_award_id":"ANR-10-LABX-07-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3343749973","display_name":null,"funder_award_id":"-10-LABX-07-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4197949938","display_name":"Stockage de donn\u00e9es massives sur ADN et polym\u00e8res artificiels","funder_award_id":"ANR-22-PEXM-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5549440890","display_name":null,"funder_award_id":"ANR-10-LAB","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6851345361","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7141889694","display_name":null,"funder_award_id":"ANR-10-LABX-07-0","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7773717649","display_name":"DNA data and Cybersecurity","funder_award_id":"ANR-24-CE39-3908","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3024364549","https://openalex.org/W4206019083","https://openalex.org/W2048865712","https://openalex.org/W1976265003","https://openalex.org/W2370378377","https://openalex.org/W2390901981","https://openalex.org/W3014558862"],"abstract_inverted_index":{"In":[0,88,153],"this":[1,89,106],"paper,":[2],"we":[3],"propose":[4],"a":[5,16,44,74,81,95,142,149,182],"novel":[6],"dynamic":[7,46],"sliding":[8,75],"window":[9,76],"encoding":[10,47,104,199],"for":[11,33,113,141,201],"storing":[12],"encrypted":[13],"data":[14,34,60],"in":[15,161],"DNA":[17,55,184,206],"form":[18],"taking":[19],"into":[20],"account":[21],"biological":[22],"constraints":[23],"(G-C":[24],"content":[25,172],"and":[26,28,61,118,148],"homopolymers)":[27],"prohibited":[29,82,120,146],"nucleotide":[30],"motifs":[31,121,147],"used":[32],"indexing.":[35],"Its":[36],"originality":[37],"is":[38,71,84,122,126],"twofold.":[39],"First,":[40],"it":[41,155],"stands":[42],"on":[43],"new":[45],"(DE)":[48],"which":[49],"takes":[50],"advantage":[51],"of":[52,105,116,119,129,138,145,163,205],"variable":[53],"length":[54],"codewords":[56],"to":[57,62,78,86,98,101],"encode":[58],"binary":[59],"avoid":[63],"homopolymers":[64],"longer":[65],"than":[66,166,197],"N":[67,117],"bases.":[68],"Second,":[69],"DE":[70],"combined":[72],"with":[73,173,181],"strategy":[77],"detect":[79],"whether":[80],"motif":[83],"about":[85],"appear.":[87],"case,":[90],"our":[91,139,190],"proposal":[92,140,191],"will":[93],"add":[94],"non-coding":[96],"base":[97],"the":[99,103,130,134,202],"sequence":[100],"prevent":[102],"motif.":[107],"Unlike":[108],"existing":[109,167],"schemes,":[110],"its":[111],"scaling":[112],"high":[114,176],"values":[115],"extremely":[123,175],"simple.":[124],"It":[125],"furthermore":[127],"independent":[128],"cryptosystem.":[131],"We":[132],"provide":[133],"theoretical":[135],"information":[136,164],"rate":[137],"given":[143],"number":[144],"maximum":[150],"homopolymer":[151],"length.":[152],"general,":[154],"offers":[156],"much":[157],"higher":[158],"performances,":[159],"particularly":[160],"terms":[162],"rate,":[165],"schemes":[168],"while":[169],"controlling":[170],"G-C":[171],"an":[174],"probability.":[177],"Moreover,":[178],"experiments":[179],"conducted":[180],"recent":[183],"storage":[185],"chain":[186],"simulator":[187],"show":[188],"that":[189],"does":[192],"not":[193],"require":[194],"more":[195],"copies":[196],"other":[198],"strategies":[200],"correct":[203],"reading":[204],"sequences.":[207]},"counts_by_year":[],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
