{"id":"https://openalex.org/W4405811784","doi":"https://doi.org/10.1109/access.2024.3523330","title":"Enhancing Gene Mutation Prediction With Sparse Regularized Autoencoders in Lung Cancer Radiomics Analysis","display_name":"Enhancing Gene Mutation Prediction With Sparse Regularized Autoencoders in Lung Cancer Radiomics Analysis","publication_year":2024,"publication_date":"2024-12-26","ids":{"openalex":"https://openalex.org/W4405811784","doi":"https://doi.org/10.1109/access.2024.3523330"},"language":"en","primary_location":{"id":"doi:10.1109/access.2024.3523330","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3523330","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2024.3523330","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101233064","display_name":"Muhammad Asif Munir","orcid":"https://orcid.org/0000-0003-2899-8223"},"institutions":[{"id":"https://openalex.org/I174731842","display_name":"Islamia University of Bahawalpur","ror":"https://ror.org/002rc4w13","country_code":"PK","type":"education","lineage":["https://openalex.org/I174731842"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Muhammad Asif Munir","raw_affiliation_strings":["Department of Electrical Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan","Electrical Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan"],"raw_orcid":"https://orcid.org/0000-0003-2899-8223","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan","institution_ids":["https://openalex.org/I174731842"]},{"raw_affiliation_string":"Electrical Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan","institution_ids":["https://openalex.org/I174731842"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062190159","display_name":"Reehan Ali Shah","orcid":"https://orcid.org/0009-0000-5466-6279"},"institutions":[{"id":"https://openalex.org/I174731842","display_name":"Islamia University of Bahawalpur","ror":"https://ror.org/002rc4w13","country_code":"PK","type":"education","lineage":["https://openalex.org/I174731842"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Reehan Ali Shah","raw_affiliation_strings":["Department of Electrical Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan","Electrical Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan","institution_ids":["https://openalex.org/I174731842"]},{"raw_affiliation_string":"Electrical Engineering, The Islamia University of Bahawalpur, Bahawalpur, Pakistan","institution_ids":["https://openalex.org/I174731842"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Munwar Ali","orcid":"https://orcid.org/0000-0001-8446-8994"},"institutions":[{"id":"https://openalex.org/I1308893265","display_name":"Shaheed Benazir Bhutto University","ror":"https://ror.org/02zwhz281","country_code":"PK","type":"education","lineage":["https://openalex.org/I1308893265"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Munwar Ali","raw_affiliation_strings":["Department of Computer Science, Shaheed Benazir Bhutto University, Shaheed Benazirabad (SBBU-SBA), Nawabshah, Pakistan","Department of Information Technology, Shaheed Benazir Bhutto University (SBBU-SBA), Nawabshah, Pakistan"],"raw_orcid":"https://orcid.org/0000-0001-8446-8994","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Shaheed Benazir Bhutto University, Shaheed Benazirabad (SBBU-SBA), Nawabshah, Pakistan","institution_ids":["https://openalex.org/I1308893265"]},{"raw_affiliation_string":"Department of Information Technology, Shaheed Benazir Bhutto University (SBBU-SBA), Nawabshah, Pakistan","institution_ids":["https://openalex.org/I1308893265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077907139","display_name":"Asif Ali Laghari","orcid":"https://orcid.org/0000-0001-5831-5943"},"institutions":[{"id":"https://openalex.org/I32399674","display_name":"Shenyang Normal University","ror":"https://ror.org/05cdfgm80","country_code":"CN","type":"education","lineage":["https://openalex.org/I32399674"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Asif Ali Laghari","raw_affiliation_strings":["Software College, Shenyang Normal University, Shenyang, China","Software college, Shenyang Normal University, Shenyang, China"],"raw_orcid":"https://orcid.org/0000-0001-5831-5943","affiliations":[{"raw_affiliation_string":"Software College, Shenyang Normal University, Shenyang, China","institution_ids":["https://openalex.org/I32399674"]},{"raw_affiliation_string":"Software college, Shenyang Normal University, Shenyang, China","institution_ids":["https://openalex.org/I32399674"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045221683","display_name":"Ahmad Almadhor","orcid":"https://orcid.org/0000-0002-8665-1669"},"institutions":[{"id":"https://openalex.org/I199702508","display_name":"Jouf University","ror":"https://ror.org/02zsyt821","country_code":"SA","type":"education","lineage":["https://openalex.org/I199702508"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Ahmad Almadhor","raw_affiliation_strings":["Department of Computer Engineering and Networks, College of Computer and Information Sciences, Jouf University, Sakaka, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0002-8665-1669","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Networks, College of Computer and Information Sciences, Jouf University, Sakaka, Saudi Arabia","institution_ids":["https://openalex.org/I199702508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041854978","display_name":"Thippa Reddy Gadekallu","orcid":"https://orcid.org/0000-0003-0097-801X"},"institutions":[{"id":"https://openalex.org/I110360157","display_name":"Lovely Professional University","ror":"https://ror.org/00et6q107","country_code":"IN","type":"education","lineage":["https://openalex.org/I110360157"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Thippa Reddy Gadekallu","raw_affiliation_strings":["Division of Research and Development, Lovely Professional University, Phagwara, India"],"raw_orcid":"https://orcid.org/0000-0003-0097-801X","affiliations":[{"raw_affiliation_string":"Division of Research and Development, Lovely Professional University, Phagwara, India","institution_ids":["https://openalex.org/I110360157"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":2.3713,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.89442425,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"13","issue":null,"first_page":"7407","last_page":"7425"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10202","display_name":"Lung Cancer Diagnosis and Treatment","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/radiomics","display_name":"Radiomics","score":0.7888879776000977},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6093697547912598},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5841039419174194},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.5650945901870728},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.43803030252456665},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.42064374685287476},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3383879065513611},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1860525906085968},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.1536986231803894},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1395753026008606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10370245575904846},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10279631614685059}],"concepts":[{"id":"https://openalex.org/C2778559731","wikidata":"https://www.wikidata.org/wiki/Q23808793","display_name":"Radiomics","level":2,"score":0.7888879776000977},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6093697547912598},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5841039419174194},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.5650945901870728},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.43803030252456665},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.42064374685287476},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3383879065513611},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1860525906085968},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.1536986231803894},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1395753026008606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10370245575904846},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10279631614685059}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2024.3523330","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3523330","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:2422c62dbc9f4183b3a63a7607b2c83c","is_oa":true,"landing_page_url":"https://doaj.org/article/2422c62dbc9f4183b3a63a7607b2c83c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 13, Pp 7407-7425 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2024.3523330","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3523330","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6000000238418579,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320327484","display_name":"Shenyang Normal University","ror":"https://ror.org/05cdfgm80"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W600208884","https://openalex.org/W2067213531","https://openalex.org/W2082290707","https://openalex.org/W2105464873","https://openalex.org/W2490420619","https://openalex.org/W2508069933","https://openalex.org/W2601105035","https://openalex.org/W2606926876","https://openalex.org/W2936503027","https://openalex.org/W2950246742","https://openalex.org/W2954400094","https://openalex.org/W2954996726","https://openalex.org/W2979026278","https://openalex.org/W2988049398","https://openalex.org/W3003257820","https://openalex.org/W3009259752","https://openalex.org/W3011249019","https://openalex.org/W3013837456","https://openalex.org/W3025036301","https://openalex.org/W3090025689","https://openalex.org/W3108057809","https://openalex.org/W3114930500","https://openalex.org/W3128646645","https://openalex.org/W3159451613","https://openalex.org/W3163510368","https://openalex.org/W3163824194","https://openalex.org/W3185262280","https://openalex.org/W3195042788","https://openalex.org/W3200193684","https://openalex.org/W3202428668","https://openalex.org/W3210332422","https://openalex.org/W4205348764","https://openalex.org/W4206373959","https://openalex.org/W4225265385","https://openalex.org/W4289520498","https://openalex.org/W4292318865","https://openalex.org/W4315435229","https://openalex.org/W4319586339","https://openalex.org/W4382203402","https://openalex.org/W4390769679","https://openalex.org/W4390872225","https://openalex.org/W4391514872","https://openalex.org/W4393236711","https://openalex.org/W4395462076","https://openalex.org/W4396914046","https://openalex.org/W4399535982","https://openalex.org/W4400438459","https://openalex.org/W4402334274","https://openalex.org/W6765451912"],"related_works":["https://openalex.org/W3000891326","https://openalex.org/W4205100762","https://openalex.org/W2559998622","https://openalex.org/W2605851261","https://openalex.org/W2734724112","https://openalex.org/W2582997534","https://openalex.org/W3009210156","https://openalex.org/W4388577230","https://openalex.org/W4385221818","https://openalex.org/W3030796519"],"abstract_inverted_index":{"Non-small":[0],"cell":[1],"lung":[2],"cancer":[3,27,41],"(NSCLC)":[4],"remains":[5],"the":[6,68,98,113,121,150,160,181,209,220,236],"major":[7],"contributor":[8],"to":[9,65,97,124,226,253,262],"global":[10],"deaths":[11],"annually.":[12],"A":[13],"slow":[14],"and":[15,18,31,56,146,178,192,201,217,275,282],"long":[16],"screening":[17],"diagnostic":[19],"process":[20],"may":[21],"lower":[22],"5-year":[23,283],"survival":[24,284],"rates.":[25],"In":[26,140,165],"precision":[28,279],"medicine,":[29],"radiomics":[30,54,81,130],"machine":[32],"learning":[33,163,255],"are":[34,87],"emerging":[35],"as":[36,205],"paradigm":[37],"shifts":[38],"in":[39,247,267],"complementing":[40],"experts.":[42],"However,":[43],"these":[44],"solutions":[45],"usually":[46],"suffer":[47],"from":[48,190],"small":[49,270],"sample":[50,122],"sizes,":[51],"high":[52],"dimensional":[53],"features,":[55],"class":[57,273],"imbalance":[58],"issues":[59],"inherently.":[60],"As":[61],"a":[62],"unified":[63],"approach":[64,152],"address":[66],"all":[67],"above":[69],"problems,":[70],"sparse":[71,103],"regularized":[72,104],"Autoencoders":[73,105],"with":[74,136,180],"Kullback-Leibler":[75,93],"(GSRA-KL)":[76],"divergence":[77,95],"capable":[78],"of":[79,101,132,223,240],"augmenting":[80],"data":[82,110,118,189,239],"alongside":[83],"inherent":[84],"dimension":[85,148],"reduction":[86],"proposed.":[88],"It":[89],"incorporates":[90],"an":[91,127],"additional":[92],"(KL)":[94],"term":[96],"cost":[99],"function":[100],"generic":[102],"(GSRA)":[106],"for":[107,117,278],"preserving":[108],"input":[109],"distribution":[111],"at":[112],"output":[114],"layer.":[115],"Experiments":[116],"augmentation":[119],"improved":[120],"size":[123],"430":[125],"using":[126,144,187],"18F-FDG":[128],"metastasis":[129],"dataset":[131],"43":[133],"NSCLC":[134,265],"patients":[135],"known":[137],"EGFR":[138,167],"mutations.":[139],"empirical":[141],"quality":[142],"evaluation":[143],"resemblance":[145],"utility":[147],"metrics,":[149],"GSRA-KL-based":[151],"surpassed":[153],"GSRA":[154,191],"while":[155],"exhibiting":[156],"competitive":[157,245],"performance":[158,197,229,246],"against":[159],"state-of-the-art":[161],"deep":[162,254],"approaches.":[164],"downstream":[166],"gene":[168,248],"mutation":[169,249],"prediction":[170,250],"enhancement,":[171],"two":[172],"multilayer":[173],"perceptron":[174],"(MLP)":[175],"models":[176],"(Model1":[177],"Model2)":[179],"same":[182],"control":[183],"setup":[184],"were":[185],"trained":[186],"augmented":[188,238],"GSRA-KL,":[193],"respectively.":[194],"The":[195],"testing":[196],"difference":[198],"between":[199],"Model2":[200],"Model1":[202],"was":[203,231],"observed":[204],"(Accuracy-18%,":[206],"area":[207],"under":[208],"receiver":[210],"operating":[211],"characteristics":[212,222],"curve":[213],"(AUC)-23%,":[214],"Precision-30%,":[215],"Recall-5%,":[216],"F1-score-17%).":[218],"Given":[219],"ablation-like":[221],"GSRA-KL":[224,243],"compared":[225,252],"GSRA,":[227],"this":[228],"improvement":[230],"probably":[232],"caused":[233],"directly":[234],"by":[235],"higher-quality":[237],"GSRA-KL.":[241],"Additionally,":[242],"demonstrated":[244],"enhancement":[251],"techniques,":[256],"confirming":[257],"its":[258],"efficacy.":[259],"We":[260],"expect":[261],"effectively":[263],"identify":[264],"mutations":[266],"scenarios":[268],"like":[269],"samples,":[271],"imbalanced":[272],"distributions,":[274],"large":[276],"dimensions":[277],"medicine":[280],"treatments":[281],"improvements.":[285]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
