{"id":"https://openalex.org/W4405219021","doi":"https://doi.org/10.1109/access.2024.3514915","title":"BioMDSum: An Effective Hybrid Biomedical Multi-Document Summarization Method Based on PageRank and Longformer Encoder-Decoder","display_name":"BioMDSum: An Effective Hybrid Biomedical Multi-Document Summarization Method Based on PageRank and Longformer Encoder-Decoder","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4405219021","doi":"https://doi.org/10.1109/access.2024.3514915"},"language":"en","primary_location":{"id":"doi:10.1109/access.2024.3514915","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3514915","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2024.3514915","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5094054927","display_name":"Azzedine Aftiss","orcid":"https://orcid.org/0009-0009-9746-4533"},"institutions":[{"id":"https://openalex.org/I3121676899","display_name":"Universit\u00e9 Ibn-Tofail","ror":"https://ror.org/02wj89n04","country_code":"MA","type":"education","lineage":["https://openalex.org/I3121676899"]}],"countries":["MA"],"is_corresponding":true,"raw_author_name":"Azzedine Aftiss","raw_affiliation_strings":["Engineering Sciences Laboratory, National School of Applied Sciences, Ibn Tofail University, Kenitra, Morocco","National School of Applied Sciences, Engineering Sciences Laboratory, Ibn Tofail University, Kenitra, Morocco"],"raw_orcid":"https://orcid.org/0009-0009-9746-4533","affiliations":[{"raw_affiliation_string":"Engineering Sciences Laboratory, National School of Applied Sciences, Ibn Tofail University, Kenitra, Morocco","institution_ids":["https://openalex.org/I3121676899"]},{"raw_affiliation_string":"National School of Applied Sciences, Engineering Sciences Laboratory, Ibn Tofail University, Kenitra, Morocco","institution_ids":["https://openalex.org/I3121676899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070022854","display_name":"Salima Lamsiyah","orcid":"https://orcid.org/0000-0001-8789-5713"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Salima Lamsiyah","raw_affiliation_strings":["Department of Computer Science, Faculty of Science, Technology and Medicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg"],"raw_orcid":"https://orcid.org/0000-0001-8789-5713","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Faculty of Science, Technology and Medicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084532237","display_name":"Sa\u00efd Ouatik El Alaoui","orcid":"https://orcid.org/0000-0003-1194-0578"},"institutions":[{"id":"https://openalex.org/I3121676899","display_name":"Universit\u00e9 Ibn-Tofail","ror":"https://ror.org/02wj89n04","country_code":"MA","type":"education","lineage":["https://openalex.org/I3121676899"]}],"countries":["MA"],"is_corresponding":false,"raw_author_name":"Said Ouatik El Alaoui","raw_affiliation_strings":["Engineering Sciences Laboratory, National School of Applied Sciences, Ibn Tofail University, Kenitra, Morocco","National School of Applied Sciences, Engineering Sciences Laboratory, Ibn Tofail University, Kenitra, Morocco"],"raw_orcid":"https://orcid.org/0000-0003-1194-0578","affiliations":[{"raw_affiliation_string":"Engineering Sciences Laboratory, National School of Applied Sciences, Ibn Tofail University, Kenitra, Morocco","institution_ids":["https://openalex.org/I3121676899"]},{"raw_affiliation_string":"National School of Applied Sciences, Engineering Sciences Laboratory, Ibn Tofail University, Kenitra, Morocco","institution_ids":["https://openalex.org/I3121676899"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055092426","display_name":"Christoph Schommer","orcid":"https://orcid.org/0000-0002-0308-7637"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Christoph Schommer","raw_affiliation_strings":["Department of Computer Science, Faculty of Science, Technology and Medicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg"],"raw_orcid":"https://orcid.org/0000-0002-0308-7637","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Faculty of Science, Technology and Medicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5094054927"],"corresponding_institution_ids":["https://openalex.org/I3121676899"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":1.627,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86872401,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"12","issue":null,"first_page":"188013","last_page":"188031"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13910","display_name":"Computational and Text Analysis Methods","score":0.9368000030517578,"subfield":{"id":"https://openalex.org/subfields/3300","display_name":"General Social Sciences"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.8967212438583374},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8127153515815735},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.6574441194534302},{"id":"https://openalex.org/keywords/pagerank","display_name":"PageRank","score":0.6244531869888306},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4258362948894501},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.059016287326812744}],"concepts":[{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.8967212438583374},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8127153515815735},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.6574441194534302},{"id":"https://openalex.org/C2779172887","wikidata":"https://www.wikidata.org/wiki/Q184316","display_name":"PageRank","level":2,"score":0.6244531869888306},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4258362948894501},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.059016287326812744}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2024.3514915","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3514915","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:orbilu.uni.lu:10993/63568","is_oa":true,"landing_page_url":"https://orbilu.uni.lu/handle/10993/63568","pdf_url":"https://orbilu.uni.lu/bitstream/10993/63568/1/BioMDSum_An_Effective_Hybrid_Biomedical_Multi-Document_Summarization_Method_Based_on_PageRank_and_Longformer_Encoder-Decoder.pdf","source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, 12, 188013 - 188031 (2024)","raw_type":"peer reviewed"},{"id":"pmh:oai:doaj.org/article:f706fb4ab66c45afbfa9140a4072fb95","is_oa":true,"landing_page_url":"https://doaj.org/article/f706fb4ab66c45afbfa9140a4072fb95","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 12, Pp 188013-188031 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2024.3514915","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3514915","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.47999998927116394,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":82,"referenced_works":["https://openalex.org/W1974339500","https://openalex.org/W1975579663","https://openalex.org/W2103868202","https://openalex.org/W2110693578","https://openalex.org/W2158703410","https://openalex.org/W2171590421","https://openalex.org/W2250539671","https://openalex.org/W2493916176","https://openalex.org/W2606974598","https://openalex.org/W2807927369","https://openalex.org/W2948306594","https://openalex.org/W2963545005","https://openalex.org/W2964061924","https://openalex.org/W2964315079","https://openalex.org/W2965373594","https://openalex.org/W2970419734","https://openalex.org/W2970641574","https://openalex.org/W3023360076","https://openalex.org/W3027042170","https://openalex.org/W3028438438","https://openalex.org/W3036120435","https://openalex.org/W3042185737","https://openalex.org/W3046375318","https://openalex.org/W3081312748","https://openalex.org/W3097758564","https://openalex.org/W3098960752","https://openalex.org/W3114423350","https://openalex.org/W3129207397","https://openalex.org/W3177382889","https://openalex.org/W3211396392","https://openalex.org/W4200417912","https://openalex.org/W4200531086","https://openalex.org/W4223898079","https://openalex.org/W4224019840","https://openalex.org/W4224329249","https://openalex.org/W4225154158","https://openalex.org/W4225727438","https://openalex.org/W4255018183","https://openalex.org/W4281802459","https://openalex.org/W4285254987","https://openalex.org/W4285291921","https://openalex.org/W4285807172","https://openalex.org/W4298339612","https://openalex.org/W4308360579","https://openalex.org/W4312711992","https://openalex.org/W4323256925","https://openalex.org/W4379528164","https://openalex.org/W4379781112","https://openalex.org/W4385521925","https://openalex.org/W4385782632","https://openalex.org/W4386629860","https://openalex.org/W4386634599","https://openalex.org/W4386986880","https://openalex.org/W4387363444","https://openalex.org/W4389523693","https://openalex.org/W4389524595","https://openalex.org/W4391129759","https://openalex.org/W6600169690","https://openalex.org/W6631501603","https://openalex.org/W6639055396","https://openalex.org/W6678262379","https://openalex.org/W6682631176","https://openalex.org/W6701908950","https://openalex.org/W6755207826","https://openalex.org/W6761205521","https://openalex.org/W6761672038","https://openalex.org/W6763953266","https://openalex.org/W6769311223","https://openalex.org/W6769627184","https://openalex.org/W6771915120","https://openalex.org/W6776048684","https://openalex.org/W6781533629","https://openalex.org/W6784375553","https://openalex.org/W6794339417","https://openalex.org/W6795805172","https://openalex.org/W6810443943","https://openalex.org/W6839397204","https://openalex.org/W6843067615","https://openalex.org/W6852162964","https://openalex.org/W6853644776","https://openalex.org/W6854866820","https://openalex.org/W6858285567"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2366403280","https://openalex.org/W1495108544","https://openalex.org/W2091301346","https://openalex.org/W3148229873","https://openalex.org/W4389760904","https://openalex.org/W2351187795","https://openalex.org/W4312905869"],"abstract_inverted_index":{"Biomedical":[0],"multi-document":[1,149],"summarization":[2,19,61,81,117,150,221],"(BioMDSum)":[3],"involves":[4],"automatically":[5],"generating":[6],"concise":[7,130],"and":[8,43,111,113,131,153,164,182,190,196,201,215],"informative":[9],"summaries":[10,37],"from":[11,134],"collections":[12],"of":[13,52,67,74,185,227],"related":[14],"biomedical":[15,53,148],"documents.":[16,54],"While":[17],"extractive":[18,80,140,214],"methods":[20,34],"have":[21],"shown":[22],"promise,":[23],"they":[24],"often":[25],"produce":[26],"incoherent":[27],"summaries.":[28],"Onethe":[29],"other":[30],"hand,":[31],"fully":[32],"abstractive":[33,116,216],"yield":[35],"coherent":[36,132],"but":[38],"demand":[39],"extensive":[40],"training":[41],"datasets":[42,151],"computational":[44],"resources":[45],"due":[46],"to":[47,87,127],"the":[48,65,100,105,135,139,146,159,193,204,224,228],"typically":[49],"lengthy":[50],"nature":[51],"Toeaddress":[55],"these":[56],"challenges,":[57],"weepropose":[58],"a":[59,121,129],"hybrid":[60,220],"method":[62,72,161,222],"that":[63,83,119,158,212],"combines":[64],"strengths":[66],"both":[68],"approaches.":[69],"The":[70,155],"proposed":[71,160,229],"consists":[73],"two":[75],"main":[76],"phases:":[77],"(i)":[78],"an":[79,115],"phase":[82,118],"uses":[84],"k-means":[85],"clustering":[86],"group":[88],"similar":[89],"sentences":[90,136],"based":[91,169],"on":[92,145,170,192,203],"their":[93],"cosine":[94],"similarity":[95],"between":[96],"embeddings":[97],"generated":[98],"by":[99,104],"sentence-BERT":[101],"model,":[102],"followed":[103],"PageRank":[106],"algorithm":[107],"for":[108],"sentence":[109],"scoring":[110],"selection;":[112],"(ii)":[114],"fine-tunes":[120],"Longform":[122],"Encoder-Decoder":[123],"(LED)":[124],"transformer":[125],"model":[126,176],"generate":[128],"summary":[133],"selected":[137],"during":[138],"phase.":[141],"Weeconducted":[142],"several":[143],"experiments":[144],"standard":[147],"Cochrane":[152,194],"MS^2.":[154],"results":[156],"demonstrate":[157],"is":[162],"competitive":[163],"outperforms":[165],"recent":[166],"state-of-the-art":[167],"systems":[168],"ROUGE":[171],"evaluation":[172],"measures.":[173],"Specifically,":[174],"our":[175,219],"achieved":[177],"ROUGE-1,":[178],"ROUGE-2,":[179],"ROUGE-L,":[180],"BERTScore,":[181],"METEOR":[183],"scores":[184],"29.41%,":[186],"6.57%,":[187],"18.31%,":[188],"85.95%,":[189],"22.15%":[191],"dataset,":[195,206],"28.79%,":[197],"8.22%,":[198],"17.93%,":[199],"85.51%,":[200],"25.17%":[202],"MS^2":[205],"respectively.":[207],"Furthermore,":[208],"aneablation":[209],"analysis":[210],"shows":[211],"integrating":[213],"phases":[217],"in":[218],"enhances":[223],"overall":[225],"performance":[226],"approach.":[230]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
