{"id":"https://openalex.org/W4401443414","doi":"https://doi.org/10.1109/access.2024.3440951","title":"Potential microRNA-Disease Association Prediction Using Node2vec and Singular Value Decomposition","display_name":"Potential microRNA-Disease Association Prediction Using Node2vec and Singular Value Decomposition","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4401443414","doi":"https://doi.org/10.1109/access.2024.3440951"},"language":"en","primary_location":{"id":"doi:10.1109/access.2024.3440951","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3440951","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2024.3440951","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011976864","display_name":"Y. D. Liu","orcid":"https://orcid.org/0009-0003-9159-8975"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunxia Liu","raw_affiliation_strings":["College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China"],"raw_orcid":"https://orcid.org/0009-0003-9159-8975","affiliations":[{"raw_affiliation_string":"College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090269605","display_name":"Jiazhen Lin","orcid":"https://orcid.org/0009-0004-9377-2460"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiazhen Lin","raw_affiliation_strings":["College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100569572","display_name":"Pin Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pin Liang","raw_affiliation_strings":["College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114205647","display_name":"Yayu Tian","orcid":null},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yayu Tian","raw_affiliation_strings":["College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091112923","display_name":"Xuan He","orcid":"https://orcid.org/0000-0002-2207-0646"},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuan He","raw_affiliation_strings":["College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China"],"raw_orcid":"https://orcid.org/0000-0002-2207-0646","affiliations":[{"raw_affiliation_string":"College of Medicine and Biological Information Engineering, Northeastern University, Shenyang, China","institution_ids":["https://openalex.org/I9224756"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I9224756"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.1869,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.48632062,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"12","issue":null,"first_page":"110563","last_page":"110574"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/singular-value-decomposition","display_name":"Singular value decomposition","score":0.7860265970230103},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.543807864189148},{"id":"https://openalex.org/keywords/value","display_name":"Value (mathematics)","score":0.5227330327033997},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.49066436290740967},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48978352546691895},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3767930865287781},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.360331654548645},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3209747076034546},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12274369597434998}],"concepts":[{"id":"https://openalex.org/C22789450","wikidata":"https://www.wikidata.org/wiki/Q420904","display_name":"Singular value decomposition","level":2,"score":0.7860265970230103},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.543807864189148},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.5227330327033997},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.49066436290740967},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48978352546691895},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3767930865287781},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.360331654548645},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3209747076034546},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12274369597434998},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2024.3440951","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3440951","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:8695e9cf6ba448b3a19d28826ad475cc","is_oa":true,"landing_page_url":"https://doaj.org/article/8695e9cf6ba448b3a19d28826ad475cc","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 12, Pp 110563-110574 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2024.3440951","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3440951","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G271956823","display_name":null,"funder_award_id":"N2319007","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1614298861","https://openalex.org/W1667789979","https://openalex.org/W1989454102","https://openalex.org/W2014946489","https://openalex.org/W2079356428","https://openalex.org/W2096723834","https://openalex.org/W2098318517","https://openalex.org/W2122211092","https://openalex.org/W2128768066","https://openalex.org/W2134245005","https://openalex.org/W2135314242","https://openalex.org/W2135733051","https://openalex.org/W2138664009","https://openalex.org/W2141222510","https://openalex.org/W2146292498","https://openalex.org/W2148974089","https://openalex.org/W2162674813","https://openalex.org/W2171260596","https://openalex.org/W2295598076","https://openalex.org/W2410390867","https://openalex.org/W2416873003","https://openalex.org/W2592189645","https://openalex.org/W2601934706","https://openalex.org/W2752943586","https://openalex.org/W2883137136","https://openalex.org/W2898512177","https://openalex.org/W2926842391","https://openalex.org/W2962756421","https://openalex.org/W2963224980","https://openalex.org/W2996975828","https://openalex.org/W3001440478","https://openalex.org/W3093996932","https://openalex.org/W3099000562","https://openalex.org/W3158143432","https://openalex.org/W3170286690","https://openalex.org/W4210548518","https://openalex.org/W4252780045","https://openalex.org/W4256413664","https://openalex.org/W4289825102","https://openalex.org/W4293651439","https://openalex.org/W4311995275","https://openalex.org/W4352990793","https://openalex.org/W4386257881","https://openalex.org/W4386305887","https://openalex.org/W6636510571","https://openalex.org/W6637259173","https://openalex.org/W6744557953"],"related_works":["https://openalex.org/W3121932492","https://openalex.org/W4232638561","https://openalex.org/W1997544008","https://openalex.org/W2954752069","https://openalex.org/W1607100495","https://openalex.org/W3004137470","https://openalex.org/W131378092","https://openalex.org/W2938523900","https://openalex.org/W1598328844","https://openalex.org/W4221140916"],"abstract_inverted_index":{"Many":[0],"biological":[1,16],"studies":[2,181],"show":[3],"that":[4,201],"microRNAs":[5],"(miRNAs)":[6],"play":[7],"an":[8,154],"indispensable":[9],"role":[10],"in":[11,22,26,205],"the":[12,27,33,42,49,99,113,122,138,149,158,168,174,179,192],"regulation":[13],"of":[14,29,38,51,102,116,161,194],"various":[15,39],"processes.":[17],"MiRNAs":[18],"are":[19],"significant":[20],"biomakers":[21],"disease":[23],"diagnosis,":[24,35],"aiding":[25],"understanding":[28],"pathogenesis":[30],"and":[31,36,85,104,118,125,134,188],"facilitating":[32],"identification,":[34],"treatment":[37],"diseases.":[40,105,119],"However,":[41],"exact":[43],"mechanism":[44],"by":[45],"which":[46],"miRNAs":[47,103,117],"influence":[48],"development":[50],"these":[52],"diseases":[53],"remains":[54],"incompletely":[55],"understood.":[56],"Thus,":[57],"it":[58,136],"is":[59,109,203],"crucial":[60],"to":[61,66,87,97,111,128,148],"develop":[62],"a":[63,76,130],"computational":[64,77],"method":[65,108],"identify":[67],"unknown":[68,89,207],"miRNA-disease":[69,90,208],"associations.":[70,209],"In":[71],"this":[72],"study,":[73],"we":[74],"designed":[75],"framework":[78],"based":[79],"on":[80,182],"singular":[81],"value":[82],"decomposition":[83],"(SVD)":[84],"node2vec":[86,107],"predict":[88],"associations":[91],"(SNMDA).":[92],"We":[93,120],"use":[94],"SVD":[95],"technique":[96],"extract":[98],"linear":[100,123],"features":[101],"The":[106,196],"applied":[110],"learn":[112],"non-linear":[114,126],"embeddings":[115],"combine":[121],"feature":[124,127,132],"get":[129],"new":[131],"vector":[133],"feed":[135],"into":[137],"Gradient":[139],"Boosting":[140],"(GB)":[141],"classifier":[142],"for":[143],"binary":[144],"classification":[145],"prediction.":[146],"According":[147],"experimental":[150,198],"findings,":[151],"SNMDA":[152,172,202],"demonstrated":[153],"average":[155],"area":[156],"under":[157],"curve":[159],"(AUC)":[160],"0.9608":[162],"during":[163],"five-fold":[164],"cross-validation.":[165],"Compared":[166],"with":[167],"other":[169],"Cutting-edge":[170],"methods,":[171],"achieved":[173],"highest":[175],"AUC":[176],"value.":[177],"Furthermore,":[178],"case":[180],"gastric":[183],"cancer,":[184],"malignant":[185],"esophageal":[186],"lesions,":[187],"lung":[189],"tumors":[190],"validate":[191],"effectiveness":[193],"SNMDA.":[195],"comprehensive":[197],"results":[199],"demonstrate":[200],"effective":[204],"identifying":[206]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
