{"id":"https://openalex.org/W4390738599","doi":"https://doi.org/10.1109/access.2024.3352823","title":"Unveiling the Potential Pattern Representation of RNA 5-Methyluridine Modification Sites Through a Novel Feature Fusion Model Leveraging Convolutional Neural Network and Tetranucleotide Composition","display_name":"Unveiling the Potential Pattern Representation of RNA 5-Methyluridine Modification Sites Through a Novel Feature Fusion Model Leveraging Convolutional Neural Network and Tetranucleotide Composition","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4390738599","doi":"https://doi.org/10.1109/access.2024.3352823"},"language":"en","primary_location":{"id":"doi:10.1109/access.2024.3352823","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3352823","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/10388321.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/10388321.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087172301","display_name":"Waleed Alam","orcid":"https://orcid.org/0000-0001-8622-4985"},"institutions":[{"id":"https://openalex.org/I80611190","display_name":"Jeonbuk National University","ror":"https://ror.org/05q92br09","country_code":"KR","type":"education","lineage":["https://openalex.org/I80611190"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Waleed Alam","raw_affiliation_strings":["Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea"],"raw_orcid":"https://orcid.org/0000-0001-8622-4985","affiliations":[{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea","institution_ids":["https://openalex.org/I80611190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101397047","display_name":"Muhammad Tahir","orcid":"https://orcid.org/0000-0002-7215-8195"},"institutions":[{"id":"https://openalex.org/I181063083","display_name":"Abdul Wali Khan University Mardan","ror":"https://ror.org/03b9y4e65","country_code":"PK","type":"education","lineage":["https://openalex.org/I181063083"]},{"id":"https://openalex.org/I46247651","display_name":"University of Manitoba","ror":"https://ror.org/02gfys938","country_code":"CA","type":"education","lineage":["https://openalex.org/I46247651"]}],"countries":["CA","PK"],"is_corresponding":false,"raw_author_name":"Muhammad Tahir","raw_affiliation_strings":["Department of Computer Science, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan","Department of Electrical and Computer Engineering, University of Manitoba, Canada"],"raw_orcid":"https://orcid.org/0000-0002-7215-8195","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan","institution_ids":["https://openalex.org/I181063083"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Manitoba, Canada","institution_ids":["https://openalex.org/I46247651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081955794","display_name":"Shahid Hussain","orcid":"https://orcid.org/0000-0001-6147-403X"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Shahid Hussain","raw_affiliation_strings":["Innovation Value Institue (IVI), School of Business, National University of Ireland Maynooth (NUIM), Maynooth, Ireland"],"raw_orcid":"https://orcid.org/0000-0001-6147-403X","affiliations":[{"raw_affiliation_string":"Innovation Value Institue (IVI), School of Business, National University of Ireland Maynooth (NUIM), Maynooth, Ireland","institution_ids":["https://openalex.org/I157286207"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102781591","display_name":"Sarah Gul","orcid":null},"institutions":[{"id":"https://openalex.org/I121243025","display_name":"International Islamic University, Islamabad","ror":"https://ror.org/047w75g40","country_code":"PK","type":"education","lineage":["https://openalex.org/I121243025"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Sarah Gul","raw_affiliation_strings":["Department of Biological Sciences, Faculty of Basic and Applied Sciences, International Islamic University Islamabad, Islamabad, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Faculty of Basic and Applied Sciences, International Islamic University Islamabad, Islamabad, Pakistan","institution_ids":["https://openalex.org/I121243025"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037634953","display_name":"Maqsood Hayat","orcid":"https://orcid.org/0000-0001-5456-2664"},"institutions":[{"id":"https://openalex.org/I181063083","display_name":"Abdul Wali Khan University Mardan","ror":"https://ror.org/03b9y4e65","country_code":"PK","type":"education","lineage":["https://openalex.org/I181063083"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Maqsood Hayat","raw_affiliation_strings":["Department of Computer Science, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan"],"raw_orcid":"https://orcid.org/0000-0001-5456-2664","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Abdul Wali Khan University, Mardan, Khyber Pakhtunkhwa, Pakistan","institution_ids":["https://openalex.org/I181063083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010741792","display_name":"Reyazur Rashid Irshad","orcid":null},"institutions":[{"id":"https://openalex.org/I47164929","display_name":"Najran University","ror":"https://ror.org/05edw4a90","country_code":"SA","type":"education","lineage":["https://openalex.org/I47164929"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Reyazur Rashid Irshad","raw_affiliation_strings":["Department of Computer Science, College of Science and Arts, Najran University, Sharurah, Najran, Saudi Arabia","Department of Computer Science, College of Science and Arts, Najran University, Sharurah, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, College of Science and Arts, Najran University, Sharurah, Najran, Saudi Arabia","institution_ids":["https://openalex.org/I47164929"]},{"raw_affiliation_string":"Department of Computer Science, College of Science and Arts, Najran University, Sharurah, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I47164929"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020404405","display_name":"Fabiano Pallonetto","orcid":"https://orcid.org/0000-0003-4416-4202"},"institutions":[{"id":"https://openalex.org/I157286207","display_name":"National University of Ireland, Maynooth","ror":"https://ror.org/048nfjm95","country_code":"IE","type":"education","lineage":["https://openalex.org/I157286207"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Fabiano Pallonetto","raw_affiliation_strings":["Innovation Value Institue (IVI), School of Business, National University of Ireland Maynooth (NUIM), Maynooth, Ireland"],"raw_orcid":"https://orcid.org/0000-0003-4416-4202","affiliations":[{"raw_affiliation_string":"Innovation Value Institue (IVI), School of Business, National University of Ireland Maynooth (NUIM), Maynooth, Ireland","institution_ids":["https://openalex.org/I157286207"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":2.6421,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.89781548,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"12","issue":null,"first_page":"10023","last_page":"10035"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7802045345306396},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.720669150352478},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5698072910308838},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5442874431610107},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.509477436542511},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4967694878578186},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4544232189655304},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.45227038860321045},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.42533016204833984},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.4129522442817688},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16942936182022095},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.14330542087554932},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10384047031402588}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7802045345306396},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.720669150352478},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5698072910308838},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5442874431610107},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.509477436542511},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4967694878578186},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4544232189655304},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.45227038860321045},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.42533016204833984},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.4129522442817688},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16942936182022095},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.14330542087554932},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10384047031402588},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2024.3352823","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3352823","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/10388321.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:mural.maynoothuniversity.ie:18904","is_oa":true,"landing_page_url":null,"pdf_url":"https://mural.maynoothuniversity.ie/id/eprint/18904/1/FP_unveiling.pdf","source":{"id":"https://openalex.org/S4377196372","display_name":"MURAL - Maynooth University Research Archive Library (National University of Ireland, Maynooth)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157286207","host_organization_name":"National University of Ireland, Maynooth","host_organization_lineage":["https://openalex.org/I157286207"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:doaj.org/article:03e420b2dc4d4e9eaacc679363324a1c","is_oa":true,"landing_page_url":"https://doaj.org/article/03e420b2dc4d4e9eaacc679363324a1c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 12, Pp 10023-10035 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2024.3352823","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2024.3352823","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/10388321.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4129328256","display_name":null,"funder_award_id":"NU/RG/SERC/12/13","funder_id":"https://openalex.org/F4320323502","funder_display_name":"Najran University"},{"id":"https://openalex.org/G5234405842","display_name":null,"funder_award_id":"NU/RCP/SERC/12/5","funder_id":"https://openalex.org/F4320323502","funder_display_name":"Najran University"},{"id":"https://openalex.org/G7013031087","display_name":null,"funder_award_id":"21/SPP/3756","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"},{"id":"https://openalex.org/F4320323502","display_name":"Najran University","ror":"https://ror.org/05edw4a90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390738599.pdf","grobid_xml":"https://content.openalex.org/works/W4390738599.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W1186776093","https://openalex.org/W1991722888","https://openalex.org/W2001508508","https://openalex.org/W2114850508","https://openalex.org/W2271840356","https://openalex.org/W2287984595","https://openalex.org/W2413285763","https://openalex.org/W2767966478","https://openalex.org/W2807768256","https://openalex.org/W2808950870","https://openalex.org/W2886373325","https://openalex.org/W2888408766","https://openalex.org/W2895576137","https://openalex.org/W2898250372","https://openalex.org/W2898323771","https://openalex.org/W2900694973","https://openalex.org/W2901890703","https://openalex.org/W2925252074","https://openalex.org/W2950363888","https://openalex.org/W2951218167","https://openalex.org/W2964960167","https://openalex.org/W2970541594","https://openalex.org/W2971769670","https://openalex.org/W2974916071","https://openalex.org/W2997604048","https://openalex.org/W3000853296","https://openalex.org/W3003360804","https://openalex.org/W3029018600","https://openalex.org/W3036278095","https://openalex.org/W3036917966","https://openalex.org/W3091252679","https://openalex.org/W3096581305","https://openalex.org/W3107307063","https://openalex.org/W3108267036","https://openalex.org/W3122331005","https://openalex.org/W3123218478","https://openalex.org/W3135644204","https://openalex.org/W3138043598","https://openalex.org/W3152943788","https://openalex.org/W3164115955","https://openalex.org/W3174855653","https://openalex.org/W3184504420","https://openalex.org/W3185541898","https://openalex.org/W3187029494","https://openalex.org/W3190763963","https://openalex.org/W4214819892","https://openalex.org/W4220742882","https://openalex.org/W4220985104","https://openalex.org/W4283266970","https://openalex.org/W4283733459","https://openalex.org/W4287660544","https://openalex.org/W4288077611","https://openalex.org/W4294691146","https://openalex.org/W4306404289","https://openalex.org/W4308352128","https://openalex.org/W4310135833","https://openalex.org/W4318408334","https://openalex.org/W4318478110","https://openalex.org/W4321368590","https://openalex.org/W4323666830","https://openalex.org/W4364322652","https://openalex.org/W4366826010","https://openalex.org/W4377103103","https://openalex.org/W4378388952","https://openalex.org/W4379193822","https://openalex.org/W4379209740","https://openalex.org/W4381800236","https://openalex.org/W4384299481","https://openalex.org/W4386879324","https://openalex.org/W4387092456","https://openalex.org/W6694517276"],"related_works":["https://openalex.org/W2468279273","https://openalex.org/W2354198838","https://openalex.org/W1989130879","https://openalex.org/W2103419012","https://openalex.org/W2378211422","https://openalex.org/W2988126442","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W1974414866","https://openalex.org/W2130974462"],"abstract_inverted_index":{"The":[0,34,164],"5-Methyluridine":[1],"(m5U),":[2],"predominantly":[3],"present":[4],"in":[5,10,49,69,101,126,189],"RNA":[6,12],"and":[7,18,27,57,66,83,86,105,116,151,160,175,212,225],"especially":[8],"enriched":[9],"transfer":[11],"(tRNA),":[13],"significantly":[14,195],"enhances":[15,196],"translational":[16],"accuracy":[17],"protein":[19],"synthesis":[20],"by":[21],"ensuring":[22],"precise":[23,115],"genetic":[24],"information":[25],"decoding":[26],"optimal":[28],"tRNA":[29],"functionality":[30],"within":[31],"cellular":[32],"mechanisms.":[33],"identification":[35],"of":[36,146,223],"m5U":[37,97,128],"modification":[38,44,98,129,158],"sites":[39,99,159],"is":[40,239],"crucial,":[41],"as":[42,52],"this":[43,132],"has":[45],"gained":[46],"significant":[47],"attention":[48],"diseases":[50],"such":[51],"breast":[53],"cancer,":[54],"stress":[55],"response,":[56],"viral":[58],"infections,":[59],"offering":[60],"insights":[61],"into":[62],"its":[63],"molecular":[64],"mechanisms":[65],"regulatory":[67],"functions":[68],"disease":[70],"contexts.":[71],"Nevertheless,":[72],"due":[73],"to":[74,154,170,183],"the":[75,87,110,121,144,200,209,229,234],"arduous":[76],"nature,":[77],"intricate":[78],"procedures,":[79],"reliance":[80],"on":[81,203],"sophisticated":[82],"expensive":[84],"instrumentation,":[85],"need":[88,112],"for":[89,95,113,123,237],"specialized":[90],"expertise,":[91],"conventional":[92],"biochemical":[93],"approaches":[94,125],"identifying":[96,127],"result":[100],"substantial":[102],"resource":[103],"expenditures":[104],"notable":[106],"temporal":[107],"investments.":[108],"Consequently,":[109],"pressing":[111],"a":[114,136,190],"efficient":[117],"computational":[118,138],"method":[119,167],"highlights":[120],"urgency":[122],"alternative":[124],"sites.":[130],"In":[131],"study,":[133],"we":[134],"introduce":[135],"novel":[137],"approach":[139],"called":[140],"\"Deep-m5U,\"":[141],"which":[142],"combines":[143],"strengths":[145],"Convolutional":[147],"Neural":[148],"Networks":[149],"(CNNs)":[150],"tetranucleotide":[152],"composition":[153,182],"accurately":[155,171],"identify":[156],"methyluridine":[157],"improve":[161],"overall":[162],"performance.":[163,197],"developed":[165],"Deep-m5U":[166,201,238],"leverages":[168],"CNNs":[169],"detect":[172],"protein-coding":[173],"regions":[174],"capture":[176,184],"relevant":[177],"motifs,":[178],"while":[179],"incorporating":[180],"tetra-nucleotide":[181],"global":[185],"compositional":[186],"characteristics,":[187],"resulting":[188],"more":[191],"robust":[192],"model":[193,202],"that":[194],"We":[198],"evaluated":[199],"two":[204],"publicly":[205],"available":[206],"benchmark":[207],"datasets:":[208],"full":[210],"transcript":[211],"mature":[213],"mRNA":[214],"datasets.":[215],"Our":[216],"results":[217],"showcase":[218],"superior":[219],"performance,":[220],"achieving":[221],"accuracies":[222],"91.26%":[224],"95.63%":[226],"respectively,":[227],"surpassing":[228],"current":[230],"cutting-edge":[231],"methods.":[232],"Moreover,":[233],"open-source":[235],"code":[236],"freely":[240],"accessible":[241],"at:":[242],"https://github.com/waleed551/Deep-m5U.":[243]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":2}],"updated_date":"2026-06-13T07:54:00.901334","created_date":"2025-10-10T00:00:00"}
