{"id":"https://openalex.org/W4285153183","doi":"https://doi.org/10.1109/access.2022.3176376","title":"A Novel Machine Learning Model for Identifying Patient-Specific Cancer Driver Genes","display_name":"A Novel Machine Learning Model for Identifying Patient-Specific Cancer Driver Genes","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4285153183","doi":"https://doi.org/10.1109/access.2022.3176376"},"language":"en","primary_location":{"id":"doi:10.1109/access.2022.3176376","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2022.3176376","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09777990.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09777990.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054187738","display_name":"Hee\u2010Won Jung","orcid":"https://orcid.org/0000-0002-2583-3354"},"institutions":[{"id":"https://openalex.org/I146429904","display_name":"Incheon National University","ror":"https://ror.org/02xf7p935","country_code":"KR","type":"education","lineage":["https://openalex.org/I146429904"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Heewon Jung","raw_affiliation_strings":["Department of Computer Science and Engineering, Incheon National University, Incheon, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Incheon National University, Incheon, Republic of Korea","institution_ids":["https://openalex.org/I146429904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064308519","display_name":"Jonghwan Choi","orcid":"https://orcid.org/0000-0002-8429-4135"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jonghwan Choi","raw_affiliation_strings":["Department of Computer Science, Yonsei University, Seoul, Republic of Korea"],"raw_orcid":"https://orcid.org/0000-0002-8429-4135","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Yonsei University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101417002","display_name":"Jiwoo Park","orcid":"https://orcid.org/0009-0005-6048-2675"},"institutions":[{"id":"https://openalex.org/I146429904","display_name":"Incheon National University","ror":"https://ror.org/02xf7p935","country_code":"KR","type":"education","lineage":["https://openalex.org/I146429904"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jiwoo Park","raw_affiliation_strings":["Department of Computer Science and Engineering, Incheon National University, Incheon, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Incheon National University, Incheon, Republic of Korea","institution_ids":["https://openalex.org/I146429904"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027608625","display_name":"Jaegyoon Ahn","orcid":"https://orcid.org/0000-0002-7020-7002"},"institutions":[{"id":"https://openalex.org/I146429904","display_name":"Incheon National University","ror":"https://ror.org/02xf7p935","country_code":"KR","type":"education","lineage":["https://openalex.org/I146429904"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jaegyoon Ahn","raw_affiliation_strings":["Department of Computer Science and Engineering, Incheon National University, Incheon, Republic of Korea"],"raw_orcid":"https://orcid.org/0000-0002-7020-7002","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Incheon National University, Incheon, Republic of Korea","institution_ids":["https://openalex.org/I146429904"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.0949,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.39169577,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"10","issue":null,"first_page":"54245","last_page":"54253"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6790012121200562},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5025579929351807},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4934450685977936},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4860437512397766},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.48108431696891785},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4727628827095032},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4440886676311493},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.43659836053848267},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3338804543018341},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2836627960205078},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2681359350681305}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6790012121200562},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5025579929351807},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4934450685977936},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4860437512397766},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.48108431696891785},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4727628827095032},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4440886676311493},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.43659836053848267},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3338804543018341},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2836627960205078},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2681359350681305},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2022.3176376","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2022.3176376","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09777990.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:3f7cfa0651fd4291beb5fef562be2587","is_oa":false,"landing_page_url":"https://doaj.org/article/3f7cfa0651fd4291beb5fef562be2587","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 10, Pp 54245-54253 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2022.3176376","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2022.3176376","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09777990.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G1773803831","display_name":null,"funder_award_id":"2019R1A2C3005212","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G2519687455","display_name":null,"funder_award_id":"2019R1A2C3005212","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G8865604014","display_name":null,"funder_award_id":"NRF-2019R1A2C3005212","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4285153183.pdf","grobid_xml":"https://content.openalex.org/works/W4285153183.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1854214752","https://openalex.org/W1923105751","https://openalex.org/W2009720434","https://openalex.org/W2019961381","https://openalex.org/W2028133290","https://openalex.org/W2114587116","https://openalex.org/W2118037512","https://openalex.org/W2141783822","https://openalex.org/W2152176732","https://openalex.org/W2155632266","https://openalex.org/W2159987716","https://openalex.org/W2175370850","https://openalex.org/W2329659234","https://openalex.org/W2471658278","https://openalex.org/W2532527181","https://openalex.org/W2782454362","https://openalex.org/W2784142616","https://openalex.org/W2894573839","https://openalex.org/W2913030342","https://openalex.org/W2949066452","https://openalex.org/W2952094639","https://openalex.org/W2952902464","https://openalex.org/W2983296017","https://openalex.org/W2989906520","https://openalex.org/W3116375360","https://openalex.org/W3129140812","https://openalex.org/W4232819947","https://openalex.org/W6607259140"],"related_works":["https://openalex.org/W3193043704","https://openalex.org/W4386259002","https://openalex.org/W1546989560","https://openalex.org/W3171520305","https://openalex.org/W1924178503","https://openalex.org/W4396689146","https://openalex.org/W4200112873","https://openalex.org/W2955796858","https://openalex.org/W2004826645","https://openalex.org/W4394984040"],"abstract_inverted_index":{"The":[0,68,97,190,214,231],"identification":[1,62,229],"of":[2,14,34,63,77,132,204,233,253],"patient-specific":[3,29,64,122,147,226],"cancer":[4,16,30,65,114,134,206,211],"driver":[5,31,37,66,181,207,227,235,256],"genes":[6,38,182,208,236,245],"plays":[7],"a":[8,55,121],"crucial":[9],"role":[10],"in":[11,102],"the":[12,72,78,83,95,128,146,152,164],"development":[13],"personalized":[15],"treatment":[17],"and":[18,136,174,198,209,220,239],"drug":[19],"development.":[20],"Several":[21],"computational":[22],"methods":[23],"have":[24,89,108],"been":[25],"proposed":[26,73,191],"for":[27,59,71],"identifying":[28],"genes,":[32],"most":[33],"which":[35,81,156],"rank":[36],"ac-cording":[39],"to":[40,145,150,168,172,251],"scores":[41],"calculated":[42,241],"from":[43,93,112,155,213],"various":[44],"gene":[45,79,87,98,106,110,118,123,129,137,148,157,170,228],"or":[46,91,184,249],"protein":[47],"network":[48,124,149],"information.":[49],"In":[50],"this":[51],"paper,":[52],"we":[53],"propose":[54],"machine":[56],"learning":[57],"model":[58,74,167,192],"more":[60],"accurate":[61],"genes.":[67,96,189,257],"training":[69],"data":[70,131],"is":[75,100,125,143],"composed":[76],"vectors,":[80,119],"indicate":[82],"impacts":[84],"that":[85,177],"one":[86,105],"can":[88,107,159],"on":[90],"receive":[92],"all":[94],"vector":[99],"patient-specific,":[101],"other":[103,188],"words,":[104],"many":[109,113],"vectors":[111,158,171],"patients.":[115],"To":[116],"make":[117,151],"first":[120],"built":[126],"using":[127,201],"expression":[130],"each":[133],"patient":[135],"regulatory":[138],"network,":[139],"then":[140],"modified":[141],"PageRank":[142],"applied":[144],"impact":[153],"matrix,":[154],"be":[160],"extracted.":[161],"We":[162],"used":[163],"Random":[165],"Forest":[166],"train":[169],"find":[173],"discriminate":[175],"patterns":[176],"show":[178],"how":[179],"known":[180,205],"affect,":[183],"are":[185,246],"affected":[186],"by,":[187],"was":[193],"tested":[194],"through":[195],"cross":[196],"validations":[197],"independent":[199],"tests":[200],"different":[202],"sets":[203],"six":[210],"types":[212],"Cancer":[215],"Genome":[216],"Atlas":[217],"(TCGA)":[218],"data,":[219],"showed":[221],"higher":[222,247],"F-scores":[223,240],"than":[224,248],"existing":[225],"algorithms.":[230],"majority":[232],"predicted":[234],"were":[237],"rare,":[238],"with":[242],"these":[243],"rare":[244],"comparable":[250],"those":[252],"frequently":[254],"identified":[255]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
