{"id":"https://openalex.org/W4214662047","doi":"https://doi.org/10.1109/access.2022.3154053","title":"Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1","display_name":"Genome-Wide Analysis to Identify Palindromes, Mirror and Inverted Repeats in SARS-CoV-2, MERS-CoV and SARS-CoV-1","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4214662047","doi":"https://doi.org/10.1109/access.2022.3154053"},"language":"en","primary_location":{"id":"doi:10.1109/access.2022.3154053","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2022.3154053","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/9668973/09721711.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/9668973/09721711.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009395136","display_name":"Nimisha Ghosh","orcid":"https://orcid.org/0000-0002-0697-6368"},"institutions":[{"id":"https://openalex.org/I193073490","display_name":"Siksha O Anusandhan University","ror":"https://ror.org/056ep7w45","country_code":"IN","type":"education","lineage":["https://openalex.org/I193073490"]},{"id":"https://openalex.org/I78613837","display_name":"Institute of Technical Education","ror":"https://ror.org/03xw9zx77","country_code":"SG","type":"education","lineage":["https://openalex.org/I78613837"]}],"countries":["IN","SG"],"is_corresponding":false,"raw_author_name":"Nimisha Ghosh","raw_affiliation_strings":["Department of Computer Science and Information Technology, Institute of Technical Education and Research, Siksha &#x2018;O&#x2019; Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India","Institute of Technical Education and Research, Siksha &#x2018","O&#x2019"],"raw_orcid":"https://orcid.org/0000-0002-0697-6368","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Technology, Institute of Technical Education and Research, Siksha &#x2018;O&#x2019; Anusandhan (Deemed to be University), Bhubaneswar, Odisha, India","institution_ids":["https://openalex.org/I193073490"]},{"raw_affiliation_string":"Institute of Technical Education and Research, Siksha &#x2018","institution_ids":["https://openalex.org/I78613837"]},{"raw_affiliation_string":"O&#x2019","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003577135","display_name":"Indrajit Saha","orcid":"https://orcid.org/0000-0001-9513-9707"},"institutions":[{"id":"https://openalex.org/I4210094264","display_name":"National Institute of Technical Teachers\u2019 Training and Research","ror":"https://ror.org/00k8f0f41","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210094264"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Indrajit Saha","raw_affiliation_strings":["Department of Computer Science and Engineering, National Institute of Technical Teachers&#x2019; Training and Research, Kolkata, West Bengal, India","National Institute of Technical Teachers&#x2019"],"raw_orcid":"https://orcid.org/0000-0001-9513-9707","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, National Institute of Technical Teachers&#x2019; Training and Research, Kolkata, West Bengal, India","institution_ids":["https://openalex.org/I4210094264"]},{"raw_affiliation_string":"National Institute of Technical Teachers&#x2019","institution_ids":["https://openalex.org/I4210094264"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021916927","display_name":"Dariusz Plewczy\u0144ski","orcid":"https://orcid.org/0000-0002-3840-7610"},"institutions":[{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Dariusz Plewczynski","raw_affiliation_strings":["Laboratory of Bioinformatics and Computational Genomics, Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland","Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0002-3840-7610","affiliations":[{"raw_affiliation_string":"Laboratory of Bioinformatics and Computational Genomics, Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]},{"raw_affiliation_string":"Laboratory of Functional and Structural Genomics, Centre of New Technologies, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.3025,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.54260948,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"10","issue":null,"first_page":"23708","last_page":"23715"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/palindrome","display_name":"Palindrome","score":0.8538788557052612},{"id":"https://openalex.org/keywords/inverted-repeat","display_name":"Inverted repeat","score":0.7851599454879761},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6260669827461243},{"id":"https://openalex.org/keywords/direct-repeat","display_name":"Direct repeat","score":0.6162418723106384},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6138165593147278},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48894062638282776},{"id":"https://openalex.org/keywords/notation","display_name":"Notation","score":0.4774915874004364},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4568808972835541},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34567344188690186},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2031499147415161},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18640783429145813},{"id":"https://openalex.org/keywords/arithmetic","display_name":"Arithmetic","score":0.08306288719177246}],"concepts":[{"id":"https://openalex.org/C44667518","wikidata":"https://www.wikidata.org/wiki/Q12321","display_name":"Palindrome","level":4,"score":0.8538788557052612},{"id":"https://openalex.org/C51603236","wikidata":"https://www.wikidata.org/wiki/Q4852694","display_name":"Inverted repeat","level":4,"score":0.7851599454879761},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6260669827461243},{"id":"https://openalex.org/C29511175","wikidata":"https://www.wikidata.org/wiki/Q5280381","display_name":"Direct repeat","level":4,"score":0.6162418723106384},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6138165593147278},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48894062638282776},{"id":"https://openalex.org/C45357846","wikidata":"https://www.wikidata.org/wiki/Q2001982","display_name":"Notation","level":2,"score":0.4774915874004364},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4568808972835541},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34567344188690186},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2031499147415161},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18640783429145813},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.08306288719177246}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2022.3154053","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2022.3154053","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/9668973/09721711.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:de2b86b59a6e464e9c4a278b02dc892e","is_oa":true,"landing_page_url":"https://doaj.org/article/de2b86b59a6e464e9c4a278b02dc892e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 10, Pp 23708-23715 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2022.3154053","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2022.3154053","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/9668973/09721711.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3075968685","display_name":null,"funder_award_id":"2019/35/O/ST6/02484","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G6538427383","display_name":null,"funder_award_id":"CVD/2020/000991","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"},{"id":"https://openalex.org/G8799024164","display_name":null,"funder_award_id":"2020/37/B/NZ2/03757","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"},{"id":"https://openalex.org/F4320322637","display_name":"Politechnika Warszawska","ror":"https://ror.org/00y0xnp53"},{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4214662047.pdf","grobid_xml":"https://content.openalex.org/works/W4214662047.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2002623303","https://openalex.org/W2079093304","https://openalex.org/W2116586125","https://openalex.org/W2127061598","https://openalex.org/W2166802510","https://openalex.org/W2187647649","https://openalex.org/W2461013690","https://openalex.org/W2790532330","https://openalex.org/W2955425038","https://openalex.org/W3004280078","https://openalex.org/W3031156497","https://openalex.org/W3040152251","https://openalex.org/W3046881664","https://openalex.org/W3090649274","https://openalex.org/W3094422131","https://openalex.org/W3112267440","https://openalex.org/W3114139943","https://openalex.org/W3122902924"],"related_works":["https://openalex.org/W1990093854","https://openalex.org/W2071117323","https://openalex.org/W2102966543","https://openalex.org/W2743529925","https://openalex.org/W4299871463","https://openalex.org/W2963632510","https://openalex.org/W2100399157","https://openalex.org/W3150477729","https://openalex.org/W2904251590","https://openalex.org/W4214662047"],"abstract_inverted_index":{"Research":[0],"pertaining":[1],"to":[2,8,21,35,67,230,266],"SARS-CoV-2":[3,36],"is":[4,99],"in":[5,40,47,82,141,218,241,264],"full":[6],"swing":[7],"understand":[9,267],"the":[10,69,90,132,142,202,211,232],"origin":[11],"and":[12,59,79,85,97,138,153,172,174,182,187,198,207,221,225,244],"evolution":[13],"of":[14,72,94,103,105,125,134,149,235],"this":[15,88],"deadly":[16],"virus":[17,48,227],"that":[18],"can":[19],"lead":[20],"its":[22],"rapid":[23],"detection.":[24],"To":[25],"achieve":[26],"this,":[27],"atypical":[28],"genomic":[29],"sequences":[30,46,104,228],"which":[31,127,252],"may":[32,42,50],"be":[33,43,51],"unique":[34],"or":[37],"Coronaviridae":[38],"family":[39],"general":[41],"investigated.":[44],"Such":[45],"genomes":[49],"responsible":[52],"for":[53,131,158,165,175,184,217,247,259],"target":[54],"prediction,":[55],"replication,":[56],"defence":[57],"mechanisms":[58],"viral":[60],"packaging.":[61],"This":[62],"fact":[63],"has":[64],"motivated":[65],"us":[66],"explore":[68],"different":[70],"types":[71],"repeats":[73,78,81,152,155,177,213,261],"such":[74,167,236],"as":[75,122,262],"palindromes,":[76,150],"mirror":[77,136,151,176],"inverted":[80,139,154,191],"SARS-CoV-2,":[83,95,185,223],"MERS-CoV":[84,96,186,224],"SARS-CoV-1.":[86],"For":[87,190],"purpose,":[89],"respective":[91,143],"reference":[92,144],"sequence":[93],"SARS-CoV-1":[98,188,226],"divided":[100],"into":[101],"descriptors":[102,119],"length":[106,160,196,200],"<inline-formula>":[107,112],"<tex-math":[108,113],"notation=\"LaTeX\">${k}$":[109,114],"</tex-math></inline-formula>":[110],"using":[111],"</tex-math></inline-formula>-mer":[115],"technique.":[116],"Thereafter,":[117],"these":[118,260],"are":[120,128,156,169,179,204,214,257],"represented":[121],"a":[123,163,194],"collection":[124],"tokens":[126],"subsequently":[129],"used":[130],"identification":[133],"palindrome,":[135],"repeat":[137,140],"sequence.":[145],"The":[146],"highest":[147],"number":[148],"identified":[157,212],"descriptor":[159,195],"10.":[161],"As":[162],"result,":[164],"palindromes":[166],"values":[168,203],"38,":[170],"42":[171],"33":[173,183],"they":[178],"52,":[180],"38":[181],"respectively.":[189,209],"repeats,":[192],"with":[193],"10":[197],"intervening":[199],"5,":[201],"59,":[205],"56":[206],"70":[208],"Moreover,":[210],"then":[215],"searched":[216],"108246,":[219],"291":[220],"340":[222],"respectively":[229],"find":[231],"population":[233],"coverage":[234],"repeats.":[237],"It":[238],"surpasses":[239],"99&#x0025;":[240],"most":[242],"cases":[243],"even":[245],"100&#x0025;":[246],"some.":[248],"Furthermore,":[249],"GC":[250],"contents":[251],"mostly":[253],"lie":[254],"between":[255],"20&#x0025;-50&#x0025;":[256],"evaluated":[258],"well":[263],"order":[265],"their":[268],"binding":[269],"efficacy.":[270]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
