{"id":"https://openalex.org/W4205681737","doi":"https://doi.org/10.1109/access.2021.3131846","title":"LNCRI: Long Non-Coding RNA Identifier in Multiple Species","display_name":"LNCRI: Long Non-Coding RNA Identifier in Multiple Species","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W4205681737","doi":"https://doi.org/10.1109/access.2021.3131846"},"language":"en","primary_location":{"id":"doi:10.1109/access.2021.3131846","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3131846","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2021.3131846","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081461422","display_name":"Saleh Musleh","orcid":"https://orcid.org/0000-0001-6536-2473"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Saleh Musleh","raw_affiliation_strings":["College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar"],"raw_orcid":"https://orcid.org/0000-0001-6536-2473","affiliations":[{"raw_affiliation_string":"College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar","institution_ids":["https://openalex.org/I4210144839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100748845","display_name":"Mohammad Tariqul Islam","orcid":"https://orcid.org/0000-0003-1226-3986"},"institutions":[{"id":"https://openalex.org/I35462925","display_name":"Southern Connecticut State University","ror":"https://ror.org/00ramkd50","country_code":"US","type":"education","lineage":["https://openalex.org/I35462925","https://openalex.org/I4210132746"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad Tariqul Islam","raw_affiliation_strings":["Computer Science Department, Southern Connecticut State University, Connecticut, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Southern Connecticut State University, Connecticut, USA","institution_ids":["https://openalex.org/I35462925"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073854686","display_name":"Tanvir Alam","orcid":"https://orcid.org/0000-0001-7033-3693"},"institutions":[{"id":"https://openalex.org/I4210144839","display_name":"Hamad bin Khalifa University","ror":"https://ror.org/03eyq4y97","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210144839"]}],"countries":["QA"],"is_corresponding":false,"raw_author_name":"Tanvir Alam","raw_affiliation_strings":["College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar. (e-mail: talam@hbku.edu.qa)"],"raw_orcid":"https://orcid.org/0000-0001-7033-3693","affiliations":[{"raw_affiliation_string":"College of Science and Engineering, Hamad Bin Khalifa University, Doha 34110, Qatar. (e-mail: talam@hbku.edu.qa)","institution_ids":["https://openalex.org/I4210144839"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.7874,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.67120617,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"9","issue":null,"first_page":"167219","last_page":"167228"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6482234597206116},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5870274305343628},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.576689600944519},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5107204914093018},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4718482494354248},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.438286691904068},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.41495442390441895},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38464778661727905},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3265947699546814},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2226753532886505}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6482234597206116},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5870274305343628},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.576689600944519},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5107204914093018},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4718482494354248},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.438286691904068},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.41495442390441895},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38464778661727905},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3265947699546814},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2226753532886505},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2021.3131846","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3131846","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f1fb707266a54012ae00a1d3455d545c","is_oa":true,"landing_page_url":"https://doaj.org/article/f1fb707266a54012ae00a1d3455d545c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 9, Pp 167219-167228 (2021)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/26975530","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/LNCRI_Long_Non-Coding_RNA_Identifier_in_Multiple_Species/26975530","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1109/access.2021.3131846","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3131846","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W984723080","https://openalex.org/W1482244404","https://openalex.org/W1975847255","https://openalex.org/W1986234964","https://openalex.org/W1990895545","https://openalex.org/W1998422171","https://openalex.org/W2011333269","https://openalex.org/W2012739246","https://openalex.org/W2024329298","https://openalex.org/W2029146706","https://openalex.org/W2029919331","https://openalex.org/W2039816251","https://openalex.org/W2042160423","https://openalex.org/W2048194168","https://openalex.org/W2052503008","https://openalex.org/W2061548680","https://openalex.org/W2085154635","https://openalex.org/W2091161969","https://openalex.org/W2097606916","https://openalex.org/W2099468911","https://openalex.org/W2107959716","https://openalex.org/W2123525093","https://openalex.org/W2127861583","https://openalex.org/W2135621733","https://openalex.org/W2141831115","https://openalex.org/W2145928119","https://openalex.org/W2148677447","https://openalex.org/W2148853951","https://openalex.org/W2153268494","https://openalex.org/W2165669669","https://openalex.org/W2168149756","https://openalex.org/W2168909179","https://openalex.org/W2174181728","https://openalex.org/W2224056471","https://openalex.org/W2247766769","https://openalex.org/W2250539671","https://openalex.org/W2415774299","https://openalex.org/W2489636286","https://openalex.org/W2593488635","https://openalex.org/W2805813857","https://openalex.org/W2807607992","https://openalex.org/W2808950870","https://openalex.org/W2886900083","https://openalex.org/W2898598946","https://openalex.org/W2929522192","https://openalex.org/W2946035471","https://openalex.org/W2947017644","https://openalex.org/W2962862931","https://openalex.org/W2967960129","https://openalex.org/W3008175582","https://openalex.org/W3106779232","https://openalex.org/W3115880421","https://openalex.org/W6737947904"],"related_works":["https://openalex.org/W4378651134","https://openalex.org/W1979633005","https://openalex.org/W2352307597","https://openalex.org/W2163724607","https://openalex.org/W1980092392","https://openalex.org/W4318812462","https://openalex.org/W37347591","https://openalex.org/W2118976126","https://openalex.org/W4252684102","https://openalex.org/W2099969795"],"abstract_inverted_index":{"The":[0,36],"pervasive":[1],"nature":[2,56],"of":[3,18,23,39,57,90,106,130,173],"long":[4],"non-coding":[5],"RNA":[6,79],"(lncRNA)":[7],"transcription":[8],"in":[9,34,127,141,180,197,209],"the":[10,21,44,52,62,88,128,148,166,171,181,189,194],"mammalian":[11],"genomes":[12],"has":[13],"changed":[14],"our":[15,185],"protein-centric":[16],"view":[17],"genomes.":[19],"But":[20],"identification":[22,89],"lncRNAs":[24],"is":[25],"an":[26],"important":[27],"task":[28,129],"to":[29,46,119,169,192],"discover":[30,47],"their":[31],"functional":[32],"role":[33],"species.":[35],"rapid":[37],"development":[38],"next-generation":[40],"sequencing":[41],"technology":[42],"leveraged":[43,94,179],"opportunity":[45],"many":[48],"lncRNA":[49,68,91,132,195],"transcripts.":[50,92],"However,":[51],"cost":[53],"and":[54,112,143,162,204],"time-consuming":[55],"transcriptomics":[58],"verification":[59],"techniques":[60],"barred":[61],"research":[63,190],"community":[64,191],"from":[65,134],"focusing":[66],"on":[67,154],"identification.":[69],"To":[70],"overcome":[71],"these":[72],"challenges":[73],"we":[74],"developed":[75],"LNCRI":[76,122,145],"(Long":[77],"Non-Coding":[78],"Identifier),":[80],"a":[81,116,198],"novel":[82],"machine":[83],"learning":[84],"(ML)-based":[85],"tool":[86,186],"for":[87,151],"We":[93,164,183],"weighted":[95],"k-mer,":[96],"pseudo":[97],"nucleotide":[98],"composition,":[99],"hexamer":[100],"usage":[101],"bias,":[102],"Fickett":[103],"score,":[104],"information":[105],"open":[107],"reading":[108],"frame,":[109],"UTR":[110],"regions,":[111],"HMMER":[113],"score":[114],"as":[115],"feature":[117],"set":[118],"develop":[120],"LNCRI.":[121],"outperformed":[123,147],"other":[124],"existing":[125,149],"models":[126],"distinguishing":[131],"transcripts":[133,137,196],"protein-coding":[135],"mRNA":[136],"with":[138],"high":[139],"accuracy":[140],"human":[142],"mouse.":[144],"also":[146],"tools":[150],"cross-species":[152],"prediction":[153],"chimpanzee,":[155],"monkey,":[156],"gorilla,":[157],"orangutan,":[158],"cow,":[159],"pig,":[160],"frog":[161],"zebrafish.":[163],"applied":[165],"SHAP":[167],"algorithm":[168],"demonstrate":[170],"importance":[172],"most":[174],"dominating":[175],"features":[176],"that":[177],"were":[178],"model.":[182],"believe":[184],"will":[187],"support":[188],"identify":[193],"highly":[199],"accurate":[200],"manner.The":[201],"benchmark":[202],"datasets":[203],"source":[205],"code":[206],"are":[207],"available":[208],"GitHub:":[210],"http://github.com/smusleh/LNCRI.":[211]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
