{"id":"https://openalex.org/W3206731431","doi":"https://doi.org/10.1109/access.2021.3119569","title":"Protein-Protein Interaction Prediction via Graph Signal Processing","display_name":"Protein-Protein Interaction Prediction via Graph Signal Processing","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3206731431","doi":"https://doi.org/10.1109/access.2021.3119569","mag":"3206731431"},"language":"en","primary_location":{"id":"doi:10.1109/access.2021.3119569","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3119569","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09568957.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09568957.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037476254","display_name":"Stefania Colonnese","orcid":"https://orcid.org/0000-0002-1807-2155"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefania Colonnese","raw_affiliation_strings":["DIET Dept., University of Rome Sapienza. (e-mail: stefania.colonnese@uniroma1.it)","DIET Dept., University of Rome Sapienza"],"raw_orcid":"https://orcid.org/0000-0002-1807-2155","affiliations":[{"raw_affiliation_string":"DIET Dept., University of Rome Sapienza. (e-mail: stefania.colonnese@uniroma1.it)","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"DIET Dept., University of Rome Sapienza","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026328253","display_name":"Manuela Petti","orcid":"https://orcid.org/0000-0002-0149-161X"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Manuela Petti","raw_affiliation_strings":["DIAG Dept., University of Rome Sapienza"],"raw_orcid":"https://orcid.org/0000-0002-0149-161X","affiliations":[{"raw_affiliation_string":"DIAG Dept., University of Rome Sapienza","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074179530","display_name":"Lorenzo Farina","orcid":"https://orcid.org/0000-0001-8314-6029"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Lorenzo Farina","raw_affiliation_strings":["DIAG Dept., University of Rome Sapienza"],"raw_orcid":"https://orcid.org/0000-0001-8314-6029","affiliations":[{"raw_affiliation_string":"DIAG Dept., University of Rome Sapienza","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053640493","display_name":"Gaetano Scarano","orcid":"https://orcid.org/0000-0002-1120-707X"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gaetano Scarano","raw_affiliation_strings":["DIET Dept., University of Rome Sapienza"],"raw_orcid":"https://orcid.org/0000-0002-1120-707X","affiliations":[{"raw_affiliation_string":"DIET Dept., University of Rome Sapienza","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022341678","display_name":"Francesca Cuomo","orcid":"https://orcid.org/0000-0002-9122-7993"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesca Cuomo","raw_affiliation_strings":["DIET Dept., University of Rome Sapienza"],"raw_orcid":"https://orcid.org/0000-0002-9122-7993","affiliations":[{"raw_affiliation_string":"DIET Dept., University of Rome Sapienza","institution_ids":["https://openalex.org/I861853513"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.7328,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.69573334,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"9","issue":null,"first_page":"142681","last_page":"142692"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7334693670272827},{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.6341809630393982},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5352248549461365},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5216487050056458},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4417266249656677},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.41565054655075073},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4127345085144043},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27224522829055786},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.21794745326042175},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1517314910888672},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.08788037300109863}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7334693670272827},{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.6341809630393982},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5352248549461365},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5216487050056458},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4417266249656677},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.41565054655075073},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4127345085144043},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27224522829055786},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.21794745326042175},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1517314910888672},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.08788037300109863},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/access.2021.3119569","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3119569","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09568957.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:4f19dea54e224aab9e1e90b0c74376f1","is_oa":true,"landing_page_url":"https://doaj.org/article/4f19dea54e224aab9e1e90b0c74376f1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 9, Pp 142681-142692 (2021)","raw_type":"article"},{"id":"pmh:oai:iris.uniroma1.it:11573/1580350","is_oa":true,"landing_page_url":"http://hdl.handle.net/11573/1580350","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:zenodo.org:102699","is_oa":true,"landing_page_url":"https://www.openaccessrepository.it/record/102699","pdf_url":null,"source":{"id":"https://openalex.org/S4306402478","display_name":"INFM-OAR (INFN Catania)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210116497","host_organization_name":"Istituto Nazionale di Fisica Nucleare, Sezione di Catania","host_organization_lineage":["https://openalex.org/I4210116497"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1109/access.2021.3119569","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3119569","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09568957.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8199999928474426}],"awards":[{"id":"https://openalex.org/G4442042839","display_name":null,"funder_award_id":"RM1181642AFA34C2","funder_id":"https://openalex.org/F4320322510","funder_display_name":"Sapienza Universit\u00e0 di Roma"},{"id":"https://openalex.org/G6431234008","display_name":null,"funder_award_id":"RM11916B6A022E2C","funder_id":"https://openalex.org/F4320322510","funder_display_name":"Sapienza Universit\u00e0 di Roma"}],"funders":[{"id":"https://openalex.org/F4320322510","display_name":"Sapienza Universit\u00e0 di Roma","ror":"https://ror.org/02be6w209"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3206731431.pdf","grobid_xml":"https://content.openalex.org/works/W3206731431.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1888005072","https://openalex.org/W2021969242","https://openalex.org/W2084668512","https://openalex.org/W2109248504","https://openalex.org/W2126498993","https://openalex.org/W2154851992","https://openalex.org/W2158787690","https://openalex.org/W2160144441","https://openalex.org/W2167869241","https://openalex.org/W2615556757","https://openalex.org/W2618265628","https://openalex.org/W2767674461","https://openalex.org/W2795066784","https://openalex.org/W2800351704","https://openalex.org/W2809219720","https://openalex.org/W2900569176","https://openalex.org/W2902622534","https://openalex.org/W2946721323","https://openalex.org/W2949698492","https://openalex.org/W2949732206","https://openalex.org/W2950742983","https://openalex.org/W2952575904","https://openalex.org/W2962759781","https://openalex.org/W2963757395","https://openalex.org/W2963858333","https://openalex.org/W2964012239","https://openalex.org/W2972505576","https://openalex.org/W2992752586","https://openalex.org/W3003326148","https://openalex.org/W3015964336","https://openalex.org/W3037029628","https://openalex.org/W3037402667","https://openalex.org/W3043806702","https://openalex.org/W3044268465","https://openalex.org/W3045012301","https://openalex.org/W3100868867","https://openalex.org/W3104097132","https://openalex.org/W3201478968","https://openalex.org/W4297733535","https://openalex.org/W6748856961","https://openalex.org/W6763057493","https://openalex.org/W6801592036"],"related_works":["https://openalex.org/W4292634579","https://openalex.org/W2022326234","https://openalex.org/W1531941329","https://openalex.org/W4388694323","https://openalex.org/W4243081378","https://openalex.org/W3215098729","https://openalex.org/W1979330259","https://openalex.org/W2622356054","https://openalex.org/W2009405916","https://openalex.org/W2043924719"],"abstract_inverted_index":{"This":[0],"paper":[1],"tackles":[2],"the":[3,7,37,70,102,108,123,128,151,157,163,174,184,188,206],"problem":[4],"of":[5,17,21,40,76,150,159,162,205],"predicting":[6],"protein-protein":[8,18,31,103],"interactions":[9,19,79,141],"that":[10,155,187],"arise":[11],"in":[12,183],"all":[13],"living":[14],"systems.":[15],"Inference":[16],"is":[20,50,64,87],"paramount":[22],"importance":[23],"for":[24,53],"understanding":[25],"fundamental":[26],"biological":[27],"phenomena,":[28],"including":[29],"cross-species":[30],"interactions,":[32],"such":[33,55],"as":[34,56,110,119],"those":[35],"causing":[36],"2020-21":[38],"pandemic":[39],"severe":[41],"acute":[42],"respiratory":[43],"syndrome":[44],"coronavirus":[45],"2":[46],"(SARS-CoV-2).":[47],"Furthermore,":[48],"it":[49,167],"relevant":[51],"also":[52],"applications":[54],"drug":[57,63],"repurposing,":[58],"where":[59],"a":[60,73,95,111,120,147],"known":[61],"authorized":[62],"applied":[65],"to":[66,133,140,168,172],"novel":[67],"diseases.":[68],"On":[69],"other":[71],"hand,":[72],"large":[74],"fraction":[75],"existing":[77],"protein":[78],"are":[80],"not":[81],"known,":[82],"and":[83,113,165],"their":[84],"experimental":[85],"measurement":[86],"resource":[88],"consuming.":[89],"To":[90],"this":[91],"purpose,":[92],"we":[93,145],"adopt":[94],"Graph":[96],"Signal":[97],"Processing":[98],"based":[99],"approach":[100],"modeling":[101],"interaction":[104],"(PPI)":[105],"network":[106],"(a.k.a.":[107],"interactome)":[109],"graph":[112,131,137,154,175],"some":[114],"connectivity":[115,160],"related":[116],"node":[117],"features":[118,132],"signal":[121,129,152,193],"on":[122,130,153],"graph.":[124],"We":[125],"then":[126],"leverage":[127],"infer":[134,173],"links":[135],"between":[136,142],"nodes,":[138,164],"corresponding":[139],"proteins.":[143],"Specifically,":[144],"develop":[146],"Markovian":[148],"model":[149],"enables":[156],"representation":[158],"properties":[161,204],"exploit":[166],"derive":[169],"an":[170],"algorithm":[171],"edges.":[176],"Performance":[177],"assessment":[178],"by":[179],"several":[180],"metrics":[181],"recognized":[182],"literature":[185],"proves":[186],"proposed":[189],"approach,":[190],"named":[191],"GRAph":[192],"processing":[194],"Based":[195],"PPI":[196,207],"prediction":[197],"(GRABP),":[198],"effectively":[199],"captures":[200],"underlying":[201],"biologically":[202],"grounded":[203],"network.":[208]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2021-10-25T00:00:00"}
