{"id":"https://openalex.org/W3159663509","doi":"https://doi.org/10.1109/access.2021.3076448","title":"ProtoPred: Advancing Oncological Research Through Identification of Proto-Oncogene Proteins","display_name":"ProtoPred: Advancing Oncological Research Through Identification of Proto-Oncogene Proteins","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W3159663509","doi":"https://doi.org/10.1109/access.2021.3076448","mag":"3159663509"},"language":"en","primary_location":{"id":"doi:10.1109/access.2021.3076448","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3076448","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/9312710/09419039.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/9312710/09419039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054026576","display_name":"Sharaf J. Malebary","orcid":"https://orcid.org/0000-0003-4339-3791"},"institutions":[{"id":"https://openalex.org/I185163786","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74","country_code":"SA","type":"education","lineage":["https://openalex.org/I185163786"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Sharaf J. Malebary","raw_affiliation_strings":["Faculty of Computing and Information Technology, King Abdulaziz University, Rabigh, Saudi Arabia","Department of Information Technology, Faculty of Computing and Information Technology, King Abdulaziz University, Rabigh, Saudi Arabia","ORCiD"],"raw_orcid":"https://orcid.org/0000-0003-4339-3791","affiliations":[{"raw_affiliation_string":"Faculty of Computing and Information Technology, King Abdulaziz University, Rabigh, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]},{"raw_affiliation_string":"Department of Information Technology, Faculty of Computing and Information Technology, King Abdulaziz University, Rabigh, Saudi Arabia","institution_ids":["https://openalex.org/I185163786"]},{"raw_affiliation_string":"ORCiD","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112540390","display_name":"Rabia Khan","orcid":null},"institutions":[{"id":"https://openalex.org/I87482320","display_name":"University of Management and Technology","ror":"https://ror.org/0095xcq10","country_code":"PK","type":"education","lineage":["https://openalex.org/I87482320"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Rabia Khan","raw_affiliation_strings":["School of Systems and Technology, University of Management and Technology, Lahore, Pakistan","Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Systems and Technology, University of Management and Technology, Lahore, Pakistan","institution_ids":["https://openalex.org/I87482320"]},{"raw_affiliation_string":"Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan","institution_ids":["https://openalex.org/I87482320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075858344","display_name":"Yaser Daanial Khan","orcid":"https://orcid.org/0000-0002-2482-275X"},"institutions":[{"id":"https://openalex.org/I87482320","display_name":"University of Management and Technology","ror":"https://ror.org/0095xcq10","country_code":"PK","type":"education","lineage":["https://openalex.org/I87482320"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Yaser Daanial Khan","raw_affiliation_strings":["School of Systems and Technology, University of Management and Technology, Lahore, Pakistan","Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan","ORCiD"],"raw_orcid":"https://orcid.org/0000-0002-2482-275X","affiliations":[{"raw_affiliation_string":"School of Systems and Technology, University of Management and Technology, Lahore, Pakistan","institution_ids":["https://openalex.org/I87482320"]},{"raw_affiliation_string":"Department of Computer Science, School of Systems and Technology, University of Management and Technology, Lahore, Pakistan","institution_ids":["https://openalex.org/I87482320"]},{"raw_affiliation_string":"ORCiD","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":3.6283,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.94616038,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"9","issue":null,"first_page":"68788","last_page":"68797"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oncogene","display_name":"Oncogene","score":0.5878090858459473},{"id":"https://openalex.org/keywords/pseudo-amino-acid-composition","display_name":"Pseudo amino acid composition","score":0.5587418079376221},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5221593379974365},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5114244818687439},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5002202987670898},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.479990690946579},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4427212178707123},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4402276575565338},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.38338562846183777},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37699803709983826},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.32356733083724976},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.23192277550697327},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21454578638076782},{"id":"https://openalex.org/keywords/cell-cycle","display_name":"Cell cycle","score":0.1837557852268219},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18021327257156372}],"concepts":[{"id":"https://openalex.org/C2781018059","wikidata":"https://www.wikidata.org/wiki/Q207609","display_name":"Oncogene","level":4,"score":0.5878090858459473},{"id":"https://openalex.org/C2780362125","wikidata":"https://www.wikidata.org/wiki/Q7254464","display_name":"Pseudo amino acid composition","level":4,"score":0.5587418079376221},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5221593379974365},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5114244818687439},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5002202987670898},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.479990690946579},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4427212178707123},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4402276575565338},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.38338562846183777},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37699803709983826},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.32356733083724976},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.23192277550697327},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21454578638076782},{"id":"https://openalex.org/C29537977","wikidata":"https://www.wikidata.org/wiki/Q188941","display_name":"Cell cycle","level":3,"score":0.1837557852268219},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18021327257156372},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2021.3076448","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3076448","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/9312710/09419039.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:60eabadc04ca4267a259208c34ee9db6","is_oa":true,"landing_page_url":"https://doaj.org/article/60eabadc04ca4267a259208c34ee9db6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 9, Pp 68788-68797 (2021)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2021.3076448","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2021.3076448","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/9312710/09419039.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6600000262260437,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G8177418390","display_name":null,"funder_award_id":"DF-291-611-1441","funder_id":"https://openalex.org/F4320322322","funder_display_name":"King Abdulaziz University"}],"funders":[{"id":"https://openalex.org/F4320322322","display_name":"King Abdulaziz University","ror":"https://ror.org/02ma4wv74"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3159663509.pdf","grobid_xml":"https://content.openalex.org/works/W3159663509.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1149957381","https://openalex.org/W1485819570","https://openalex.org/W1943237984","https://openalex.org/W1967311984","https://openalex.org/W2006035618","https://openalex.org/W2030996806","https://openalex.org/W2044761914","https://openalex.org/W2067305692","https://openalex.org/W2067448387","https://openalex.org/W2106141559","https://openalex.org/W2120026469","https://openalex.org/W2129508689","https://openalex.org/W2151147267","https://openalex.org/W2151900782","https://openalex.org/W2163565167","https://openalex.org/W2170747616","https://openalex.org/W2181939637","https://openalex.org/W2209329607","https://openalex.org/W2313411748","https://openalex.org/W2387572940","https://openalex.org/W2553732885","https://openalex.org/W2588839408","https://openalex.org/W2609394459","https://openalex.org/W2614370829","https://openalex.org/W2642879556","https://openalex.org/W2744385871","https://openalex.org/W2754289562","https://openalex.org/W2782893969","https://openalex.org/W2791600746","https://openalex.org/W2794797435","https://openalex.org/W2800074215","https://openalex.org/W2800245053","https://openalex.org/W2803011470","https://openalex.org/W2884524796","https://openalex.org/W2886905442","https://openalex.org/W2896188973","https://openalex.org/W2903007506","https://openalex.org/W2905397045","https://openalex.org/W2906411860","https://openalex.org/W2908486698","https://openalex.org/W2923709640","https://openalex.org/W2936594535","https://openalex.org/W2947912105","https://openalex.org/W2969438243","https://openalex.org/W2982150996","https://openalex.org/W3002225207","https://openalex.org/W6685828814","https://openalex.org/W6737546563"],"related_works":["https://openalex.org/W2912862995","https://openalex.org/W3129816939","https://openalex.org/W2101501829","https://openalex.org/W2985427592","https://openalex.org/W2889302474","https://openalex.org/W2474252776","https://openalex.org/W2030650052","https://openalex.org/W3195479200","https://openalex.org/W3173525510","https://openalex.org/W1990932448"],"abstract_inverted_index":{"Proto-oncogenes":[0],"are":[1,119],"the":[2,6,38,43,54,57,89,111,115,126,164,174,178,186,198,222,231,240],"genes":[3,69],"that":[4,123,177,221],"have":[5],"potential":[7],"to":[8,29,76],"transform":[9],"normal":[10],"cells":[11,14],"into":[12,163],"cancer":[13,107,235],"as":[15],"a":[16,129,181,227],"result":[17],"of":[18,24,40,52,56,91,106,114,128,132,147,180,190,234,242],"mutations.":[19],"They":[20],"usually":[21],"contain":[22],"encoding":[23],"proteins":[25,118],"whose":[26],"function":[27],"is":[28,60,86,108],"inhibit":[30],"cell":[31,34],"differentiation,":[32],"stimulate":[33],"division,":[35],"and":[36,82,102,157,205,213,236],"prevent":[37],"death":[39],"cells.":[41],"While":[42],"prognosis":[44,233],"regarding":[45],"proto-oncogene":[46,191],"may":[47],"occur":[48],"at":[49],"varying":[50],"phases":[51],"cancer,":[53],"accuracy":[55],"identification":[58,146],"method":[59,194],"always":[61],"questionable.":[62],"The":[63,149,193],"standard":[64],"procedure":[65],"for":[66,110,144],"detecting":[67],"these":[68],"involves":[70],"in-vitro":[71],"experimentations":[72],"but":[73],"it":[74],"proves":[75],"be":[77],"very":[78],"costly,":[79],"time":[80],"taking,":[81],"laborious.":[83],"This":[84],"problem":[85],"addressed":[87],"by":[88],"use":[90,179],"computer-aided":[92],"approaches":[93],"established":[94],"in":[95,99,136,152,230,239],"studies":[96],"encompassing":[97],"methods":[98],"computational":[100],"biology":[101],"bioinformatics.":[103],"Early":[104],"diagnosis":[105],"crucial":[109],"full":[112],"recovery":[113],"patient.":[116],"Proto-oncogene":[117],"an":[120,141],"important":[121],"biomarker":[122],"helps":[124],"identify":[125],"onset":[127],"specific":[130],"type":[131],"cancer.":[133,245],"Keeping":[134],"this":[135,138,153],"mind,":[137],"study":[139,154,175],"proposes":[140],"efficient":[142],"methodology":[143],"in-silico":[145],"proto-oncogenes.":[148],"predictor":[150],"proposed":[151,223],"computes":[155],"position":[156],"composition":[158,166],"relevant":[159],"statistical":[160],"features":[161],"incorporated":[162],"pseudo-amino-acid":[165],"(PseAAC)":[167],"based":[168],"on":[169],"Chou\u2019s":[170],"5-step":[171],"rules.":[172],"Subsequently,":[173],"finds":[176],"random":[182],"forest":[183],"classifier":[184],"performs":[185],"most":[187],"accurate":[188,215],"prediction":[189],"proteins.":[192],"was":[195],"validated":[196],"using":[197],"10":[199],"folds":[200],"cross-validation,":[201],"Jackknife":[202],"testing,":[203,208],"Self-Consistency,":[204],"Independent":[206],"set":[207],"giving":[209],"95.44%,":[210],"97.17%,":[211],"99.8%,":[212],"96.41%":[214],"results,":[216],"respectively.":[217],"These":[218],"results":[219],"imply":[220],"model":[224],"can":[225],"play":[226],"key":[228],"role":[229],"early":[232],"aid":[237],"scientists":[238],"discovery":[241],"mechanisms":[243],"against":[244]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":20}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
