{"id":"https://openalex.org/W3109511044","doi":"https://doi.org/10.1109/access.2020.3040327","title":"Using Alias Sampling Strategy Based on Network Embeddings to Detect Protein Complexes","display_name":"Using Alias Sampling Strategy Based on Network Embeddings to Detect Protein Complexes","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3109511044","doi":"https://doi.org/10.1109/access.2020.3040327","mag":"3109511044"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.3040327","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3040327","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09268940.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09268940.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100705977","display_name":"Xiaoxia Liu","orcid":"https://orcid.org/0009-0003-6662-9020"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoxia Liu","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048043129","display_name":"Shengtian Sang","orcid":"https://orcid.org/0000-0003-0851-9520"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shengtian Sang","raw_affiliation_strings":["Department of Medicine Biomedical Informatics, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Medicine Biomedical Informatics, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014916744","display_name":"Xiaoxu Wang","orcid":"https://orcid.org/0000-0002-7106-1017"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoxu Wang","raw_affiliation_strings":["Information Science and Technology College, Dalian Maritime University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Information Science and Technology College, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100705977"],"corresponding_institution_ids":["https://openalex.org/I43313876"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11639268,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"8","issue":null,"first_page":"211773","last_page":"211783"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/alias","display_name":"Alias","score":0.8461331129074097},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7171130776405334},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.6558082103729248},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6203657984733582},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.5384262800216675},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5029212832450867},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47553396224975586},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4155219793319702},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.34837013483047485},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2980819344520569},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19658207893371582}],"concepts":[{"id":"https://openalex.org/C46681722","wikidata":"https://www.wikidata.org/wiki/Q4725589","display_name":"Alias","level":2,"score":0.8461331129074097},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7171130776405334},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.6558082103729248},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6203657984733582},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.5384262800216675},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5029212832450867},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47553396224975586},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4155219793319702},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.34837013483047485},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2980819344520569},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19658207893371582},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.3040327","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3040327","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09268940.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:bc782068a60249b8a4664443e2cf6011","is_oa":true,"landing_page_url":"https://doaj.org/article/bc782068a60249b8a4664443e2cf6011","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 211773-211783 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.3040327","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3040327","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/6514899/09268940.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G162595793","display_name":null,"funder_award_id":"313202","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2376276132","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G2983374183","display_name":null,"funder_award_id":"3132020219","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6677378098","display_name":null,"funder_award_id":"No. 2020","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8109111336","display_name":null,"funder_award_id":"2020M680931","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3109511044.pdf","grobid_xml":"https://content.openalex.org/works/W3109511044.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W92018061","https://openalex.org/W1888005072","https://openalex.org/W1973508741","https://openalex.org/W1988496202","https://openalex.org/W2021025020","https://openalex.org/W2050721857","https://openalex.org/W2052261215","https://openalex.org/W2057793636","https://openalex.org/W2076640061","https://openalex.org/W2082565035","https://openalex.org/W2086254934","https://openalex.org/W2090891622","https://openalex.org/W2095867585","https://openalex.org/W2100371004","https://openalex.org/W2100495367","https://openalex.org/W2107067224","https://openalex.org/W2110708857","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2117720828","https://openalex.org/W2132582966","https://openalex.org/W2135098204","https://openalex.org/W2136850043","https://openalex.org/W2140280811","https://openalex.org/W2142535891","https://openalex.org/W2154851992","https://openalex.org/W2155968618","https://openalex.org/W2156718197","https://openalex.org/W2163485494","https://openalex.org/W2165253681","https://openalex.org/W2171030481","https://openalex.org/W2387462954","https://openalex.org/W2393319904","https://openalex.org/W2417225937","https://openalex.org/W2602844900","https://openalex.org/W2774282849","https://openalex.org/W2775217026","https://openalex.org/W2780577559","https://openalex.org/W2905315292","https://openalex.org/W2918402879","https://openalex.org/W2962756421","https://openalex.org/W3036658719","https://openalex.org/W3104097132","https://openalex.org/W6682755970"],"related_works":["https://openalex.org/W4385605198","https://openalex.org/W2151266859","https://openalex.org/W2056017980","https://openalex.org/W2333004434","https://openalex.org/W4256550813","https://openalex.org/W4400966522","https://openalex.org/W1557487237","https://openalex.org/W4248617250","https://openalex.org/W275149381","https://openalex.org/W2997042634"],"abstract_inverted_index":{"Detecting":[0],"protein":[1,31,105,125,154,169,185,193],"complexes":[2,32,194],"from":[3,33],"available":[4],"protein-protein":[5],"interaction":[6],"(PPI)":[7],"data":[8],"will":[9],"help":[10],"to":[11,58,103,129,156,159,167],"deeply":[12],"understand":[13],"the":[14,17,38,45,61,68,74,83,119,147,161,188,192],"mechanism":[15],"of":[16,47,50,55,67,76,113,138,149],"biological":[18,201],"activities.":[19],"In":[20],"recent":[21],"years,":[22],"various":[23],"computational":[24,40],"methods":[25,41,182],"have":[26,199],"been":[27],"developed":[28],"for":[29,109],"identifying":[30],"PPI":[34,51,69,176],"networks.":[35,52],"Almost":[36],"all":[37],"basic":[39],"mainly":[42],"depend":[43],"on":[44,124,172],"association":[46],"topological":[48,65],"analysis":[49],"However,":[53],"most":[54],"them":[56],"fail":[57],"satisfactorily":[59],"capture":[60],"global":[62],"and":[63],"local":[64],"structures":[66],"networks,":[70,177],"as":[71,73],"well":[72],"diversity":[75],"connectivity":[77],"patterns":[78],"between":[79],"individual":[80],"nodes":[81],"at":[82],"same":[84],"time.":[85],"To":[86],"solve":[87],"this":[88,91],"problem,":[89],"in":[90,165,183],"work":[92],"we":[93],"propose":[94],"a":[95,110,139,150,153],"node":[96,126],"embedding":[97,127],"based":[98,123],"alias":[99,120],"sampling":[100,121],"extension":[101],"method":[102,179,198],"detect":[104],"complexes.":[106,170,186],"More":[107],"specifically,":[108],"given":[111],"set":[112],"seed":[114],"nodes,":[115],"it":[116,135],"first":[117],"uses":[118],"strategy":[122],"similarities":[128],"select":[130],"potential":[131],"addable":[132],"nodes.":[133],"Then":[134],"makes":[136],"use":[137],"new":[140],"conductance":[141],"measure,":[142],"which":[143],"could":[144],"better":[145],"quantify":[146],"likelihood":[148],"subgraph":[151,164],"being":[152],"complex,":[155],"decide":[157],"whether":[158],"extend":[160],"current":[162],"candidate":[163],"order":[166],"find":[168],"Evaluated":[171],"six":[173],"real":[174],"yeast":[175],"our":[178,197],"outperforms":[180],"state-of-the-art":[181],"detecting":[184],"Furthermore,":[187],"experimental":[189],"results":[190],"demonstrate":[191],"predicted":[195],"by":[196],"higher":[200],"significance.":[202]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
