{"id":"https://openalex.org/W3084305023","doi":"https://doi.org/10.1109/access.2020.3022242","title":"Collaborative Deep Learning Models to Handle Class Imbalance in FlowCam Plankton Imagery","display_name":"Collaborative Deep Learning Models to Handle Class Imbalance in FlowCam Plankton Imagery","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3084305023","doi":"https://doi.org/10.1109/access.2020.3022242","mag":"3084305023"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.3022242","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3022242","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09187202.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09187202.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085224143","display_name":"Thomas H. Kerr","orcid":"https://orcid.org/0000-0001-7008-7242"},"institutions":[{"id":"https://openalex.org/I23923803","display_name":"University of Exeter","ror":"https://ror.org/03yghzc09","country_code":"GB","type":"education","lineage":["https://openalex.org/I23923803"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Kerr","raw_affiliation_strings":["Department of Computer Science, University of Exeter, Exeter, U.K"],"raw_orcid":"https://orcid.org/0000-0001-7008-7242","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Exeter, Exeter, U.K","institution_ids":["https://openalex.org/I23923803"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101909060","display_name":"James R. Clark","orcid":"https://orcid.org/0000-0002-1924-5871"},"institutions":[{"id":"https://openalex.org/I2802566253","display_name":"Plymouth Marine Laboratory","ror":"https://ror.org/05av9mn02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802566253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James R. Clark","raw_affiliation_strings":["Plymouth Marine Laboratory, Plymouth, U.K"],"raw_orcid":"https://orcid.org/0000-0002-1924-5871","affiliations":[{"raw_affiliation_string":"Plymouth Marine Laboratory, Plymouth, U.K","institution_ids":["https://openalex.org/I2802566253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045425649","display_name":"Elaine S. Fileman","orcid":"https://orcid.org/0000-0002-7795-7535"},"institutions":[{"id":"https://openalex.org/I2802566253","display_name":"Plymouth Marine Laboratory","ror":"https://ror.org/05av9mn02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802566253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Elaine S. Fileman","raw_affiliation_strings":["Plymouth Marine Laboratory, Plymouth, U.K"],"raw_orcid":"https://orcid.org/0000-0002-7795-7535","affiliations":[{"raw_affiliation_string":"Plymouth Marine Laboratory, Plymouth, U.K","institution_ids":["https://openalex.org/I2802566253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082914041","display_name":"Claire E. Widdicombe","orcid":"https://orcid.org/0000-0002-1688-0212"},"institutions":[{"id":"https://openalex.org/I2802566253","display_name":"Plymouth Marine Laboratory","ror":"https://ror.org/05av9mn02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2802566253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Claire E. Widdicombe","raw_affiliation_strings":["Plymouth Marine Laboratory, Plymouth, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plymouth Marine Laboratory, Plymouth, U.K","institution_ids":["https://openalex.org/I2802566253"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087140377","display_name":"Nicolas Pugeault","orcid":"https://orcid.org/0000-0002-3455-6280"},"institutions":[{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Pugeault","raw_affiliation_strings":["Sir Alwyn Williams Building, University of Glasgow, Glasgow, U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sir Alwyn Williams Building, University of Glasgow, Glasgow, U.K","institution_ids":["https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":5.1966,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.95355191,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"8","issue":null,"first_page":"170013","last_page":"170032"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12535","display_name":"Machine Learning and Data Classification","score":0.9596999883651733,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9588000178337097,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.714934229850769},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6990454196929932},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6286169290542603},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.616918683052063},{"id":"https://openalex.org/keywords/plankton","display_name":"Plankton","score":0.6000878810882568},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5847190618515015},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5369002819061279},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.4304669499397278},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.11569201946258545},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08947175741195679}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.714934229850769},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6990454196929932},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6286169290542603},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.616918683052063},{"id":"https://openalex.org/C108469399","wikidata":"https://www.wikidata.org/wiki/Q25367","display_name":"Plankton","level":2,"score":0.6000878810882568},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5847190618515015},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5369002819061279},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.4304669499397278},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.11569201946258545},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08947175741195679},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/access.2020.3022242","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3022242","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09187202.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:eprints.gla.ac.uk:223144","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Articles"},{"id":"pmh:oai:doaj.org/article:48626100feec417883cb280168b5baeb","is_oa":true,"landing_page_url":"https://doaj.org/article/48626100feec417883cb280168b5baeb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 170013-170032 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.3022242","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3022242","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09187202.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1821804007","display_name":null,"funder_award_id":"R015953","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"},{"id":"https://openalex.org/G2091100600","display_name":null,"funder_award_id":"NE/R015953/1","funder_id":"https://openalex.org/F4320320022","funder_display_name":"Sight Research UK"},{"id":"https://openalex.org/G316067346","display_name":null,"funder_award_id":"NE/R015953/1","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"},{"id":"https://openalex.org/G3305931967","display_name":null,"funder_award_id":"NE/R015953","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"},{"id":"https://openalex.org/G3855435662","display_name":null,"funder_award_id":"N510129","funder_id":"https://openalex.org/F4320313467","funder_display_name":"Alan Turing Institute"},{"id":"https://openalex.org/G4072067573","display_name":null,"funder_award_id":"EP/N510129/1","funder_id":"https://openalex.org/F4320313467","funder_display_name":"Alan Turing Institute"},{"id":"https://openalex.org/G4169752833","display_name":"Marine LTSS: Climate Linked Atlantic Sector Science","funder_award_id":"NE/R015953/1","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"},{"id":"https://openalex.org/G5171465564","display_name":null,"funder_award_id":"pml010009","funder_id":"https://openalex.org/F4320334631","funder_display_name":"Natural Environment Research Council"},{"id":"https://openalex.org/G7017544333","display_name":null,"funder_award_id":"pml010009","funder_id":"https://openalex.org/F4320320022","funder_display_name":"Sight Research UK"}],"funders":[{"id":"https://openalex.org/F4320313467","display_name":"Alan Turing Institute","ror":"https://ror.org/035dkdb55"},{"id":"https://openalex.org/F4320320022","display_name":"Sight Research UK","ror":"https://ror.org/03z2py885"},{"id":"https://openalex.org/F4320334631","display_name":"Natural Environment Research Council","ror":"https://ror.org/02b5d8509"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3084305023.pdf","grobid_xml":"https://content.openalex.org/works/W3084305023.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W334090008","https://openalex.org/W1487629352","https://openalex.org/W1522301498","https://openalex.org/W1530098540","https://openalex.org/W1541847650","https://openalex.org/W1604680558","https://openalex.org/W1665214252","https://openalex.org/W1686810756","https://openalex.org/W1774232365","https://openalex.org/W1881066983","https://openalex.org/W1966036357","https://openalex.org/W1966594649","https://openalex.org/W1986667786","https://openalex.org/W1989016021","https://openalex.org/W1996194225","https://openalex.org/W2003913934","https://openalex.org/W2015745448","https://openalex.org/W2019720139","https://openalex.org/W2026942141","https://openalex.org/W2076600139","https://openalex.org/W2095705004","https://openalex.org/W2096718134","https://openalex.org/W2097117768","https://openalex.org/W2108598243","https://openalex.org/W2116521778","https://openalex.org/W2132791018","https://openalex.org/W2135757495","https://openalex.org/W2153237278","https://openalex.org/W2163605009","https://openalex.org/W2194775991","https://openalex.org/W2427657585","https://openalex.org/W2512632326","https://openalex.org/W2513863019","https://openalex.org/W2562319768","https://openalex.org/W2618530766","https://openalex.org/W2767106145","https://openalex.org/W2884561390","https://openalex.org/W2903748065","https://openalex.org/W2905050155","https://openalex.org/W2909640887","https://openalex.org/W2951696358","https://openalex.org/W2955425717","https://openalex.org/W2959492430","https://openalex.org/W2963446712","https://openalex.org/W2981278773","https://openalex.org/W4234643200","https://openalex.org/W6629178250","https://openalex.org/W6631190155","https://openalex.org/W6637242042","https://openalex.org/W6637373629","https://openalex.org/W6674330103","https://openalex.org/W6684191040","https://openalex.org/W6737496325","https://openalex.org/W6742348326","https://openalex.org/W6762718338","https://openalex.org/W6770034655","https://openalex.org/W6977740228"],"related_works":["https://openalex.org/W2595172197","https://openalex.org/W2084856301","https://openalex.org/W2127970246","https://openalex.org/W2885125400","https://openalex.org/W1989889224","https://openalex.org/W4382618745","https://openalex.org/W1973775000","https://openalex.org/W2748922771","https://openalex.org/W1987128138","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Using":[0],"automated":[1,82,118,250],"imaging":[2,120],"technologies,":[3],"it":[4],"is":[5],"now":[6],"possible":[7],"to":[8,21,32,50,75,157],"generate":[9],"previously":[10],"unprecedented":[11],"volumes":[12],"of":[13,25,231,248],"plankton":[14,26,83,99,119,251],"image":[15,124],"data":[16],"which":[17,86],"can":[18,243],"be":[19],"used":[20,49],"study":[22],"the":[23,29,104,117,173,190,235,246],"composition":[24],"assemblages.":[27],"However,":[28],"current":[30],"need":[31],"manually":[33],"classify":[34],"individual":[35,175,192],"images":[36,138],"introduces":[37],"a":[38,127,160,182,204,211,218,229],"bottleneck":[39],"into":[40],"processing":[41],"chains.":[42],"Although":[43],"Machine":[44],"Learning":[45,74,155],"techniques":[46],"have":[47,58],"been":[48],"try":[51],"and":[52,93,108,210],"address":[53],"this":[54],"issue,":[55],"past":[56],"efforts":[57],"suffered":[59],"from":[60,100],"accuracy":[61,165,188,196,208,247],"limitations,":[62],"especially":[63],"in":[64,72,103,159,186,203,234],"minority":[65,168],"classes.":[66],"Here":[67],"we":[68,237],"use":[69],"state-of-the-art":[70],"methods":[71],"Deep":[73,154],"investigate":[76],"suitable":[77],"architectures":[78],"for":[79,90,167],"training":[80],"an":[81],"classification":[84,162,164,252],"system":[85,121],"achieves":[87],"high":[88],"efficacy":[89],"both":[91],"abundant":[92],"rare":[94],"taxa.":[95],"We":[96,148],"collected":[97],"live":[98],"Station":[101],"L4":[102],"Western":[105],"English":[106],"Channel":[107],"imaged":[109],"11,371":[110],"particles":[111],"covering":[112],"104":[113,224],"taxonomic":[114,225],"groups":[115],"using":[116],"FlowCam.":[122],"The":[123,177],"set":[125,222],"contained":[126],"severe":[128],"class":[129],"imbalance,":[130],"with":[131,172],"some":[132],"taxa":[133,142],"represented":[134,144],"by":[135,145,151,198],">":[136],"600":[137],"while":[139,194],"other,":[140],"rarer":[141],"were":[143],"just":[146],"14.":[147],"demonstrate":[149],"that":[150],"allowing":[152],"multiple":[153],"models":[156,242],"collaborate":[158],"single":[161],"system,":[163],"improves":[166],"classes":[169],"when":[170],"compared":[171],"best":[174,191],"model.":[176],"top":[178],"collaborative":[179,239],"model":[180],"achieved":[181],"6":[183],"%":[184,206,213],"improvement":[185],"F1":[187,214],"over":[189],"model,":[193],"overall":[195,207],"improved":[197],"3.2":[199],"%.":[200],"This":[201],"resulted":[202],"97.4":[205],"score":[209,216],"96.2":[212],"macro":[215],"on":[217,228],"separate":[219],"holdout":[220],"test":[221],"containing":[223],"groups.":[226],"Based":[227],"survey":[230],"similar":[232],"studies":[233],"literature,":[236],"believe":[238],"deep":[240],"learning":[241],"significantly":[244],"improve":[245],"existing":[249],"systems.":[253]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":6}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
