{"id":"https://openalex.org/W3080360381","doi":"https://doi.org/10.1109/access.2020.3018105","title":"Identification of MicroRNA Regulatory Modules by Clustering MicroRNA-Target Interactions","display_name":"Identification of MicroRNA Regulatory Modules by Clustering MicroRNA-Target Interactions","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3080360381","doi":"https://doi.org/10.1109/access.2020.3018105","mag":"3080360381"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.3018105","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3018105","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09172068.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09172068.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024389659","display_name":"Yi Yang","orcid":"https://orcid.org/0000-0003-2621-8027"},"institutions":[{"id":"https://openalex.org/I87318903","display_name":"Hunan Women'S University","ror":"https://ror.org/032bw1116","country_code":"CN","type":"education","lineage":["https://openalex.org/I87318903"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yi Yang","raw_affiliation_strings":["College of Information Science and Engineering, Hunan Women\u2019s University, Changsha, China","College of Information Science and Engineering, Hunan Women's University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0003-2621-8027","affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan Women\u2019s University, Changsha, China","institution_ids":["https://openalex.org/I87318903"]},{"raw_affiliation_string":"College of Information Science and Engineering, Hunan Women's University, Changsha, China","institution_ids":["https://openalex.org/I87318903"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056039181","display_name":"Xuting Wan","orcid":"https://orcid.org/0000-0002-4650-9393"},"institutions":[{"id":"https://openalex.org/I87318903","display_name":"Hunan Women'S University","ror":"https://ror.org/032bw1116","country_code":"CN","type":"education","lineage":["https://openalex.org/I87318903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuting Wan","raw_affiliation_strings":["College of Information Science and Engineering, Hunan Women\u2019s University, Changsha, China","College of Information Science and Engineering, Hunan Women's University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-4650-9393","affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan Women\u2019s University, Changsha, China","institution_ids":["https://openalex.org/I87318903"]},{"raw_affiliation_string":"College of Information Science and Engineering, Hunan Women's University, Changsha, China","institution_ids":["https://openalex.org/I87318903"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5024389659"],"corresponding_institution_ids":["https://openalex.org/I87318903"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.1606,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.44488245,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"8","issue":null,"first_page":"154133","last_page":"154142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.807053804397583},{"id":"https://openalex.org/keywords/cmin","display_name":"Cmin","score":0.6910921335220337},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6466001272201538},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6106162667274475},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4676019549369812},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4363028109073639},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35201728343963623},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.27203303575515747},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24827367067337036},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20207032561302185},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1820807158946991}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.807053804397583},{"id":"https://openalex.org/C2778335254","wikidata":"https://www.wikidata.org/wiki/Q5137314","display_name":"Cmin","level":4,"score":0.6910921335220337},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6466001272201538},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6106162667274475},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4676019549369812},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4363028109073639},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35201728343963623},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.27203303575515747},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24827367067337036},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20207032561302185},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1820807158946991},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C22979827","wikidata":"https://www.wikidata.org/wiki/Q5137311","display_name":"Cmax","level":3,"score":0.0},{"id":"https://openalex.org/C181389837","wikidata":"https://www.wikidata.org/wiki/Q461809","display_name":"Bioavailability","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.3018105","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3018105","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09172068.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:28b0b474a08847c0929e11d2086b0f27","is_oa":true,"landing_page_url":"https://doaj.org/article/28b0b474a08847c0929e11d2086b0f27","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 154133-154142 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.3018105","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3018105","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09172068.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7610062902","display_name":null,"funder_award_id":"18A470","funder_id":"https://openalex.org/F4320311213","funder_display_name":"Education Department of Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320311213","display_name":"Education Department of Hunan Province","ror":"https://ror.org/05ckg3w11"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3080360381.pdf","grobid_xml":"https://content.openalex.org/works/W3080360381.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1972785590","https://openalex.org/W2007954020","https://openalex.org/W2042236541","https://openalex.org/W2073764144","https://openalex.org/W2096578372","https://openalex.org/W2108442028","https://openalex.org/W2110620844","https://openalex.org/W2117391818","https://openalex.org/W2125879257","https://openalex.org/W2143693563","https://openalex.org/W2165232124","https://openalex.org/W2169404653","https://openalex.org/W2229421811","https://openalex.org/W2415355903","https://openalex.org/W2529340146","https://openalex.org/W2604463837","https://openalex.org/W2770516194","https://openalex.org/W2789567750","https://openalex.org/W2796494016","https://openalex.org/W2798319431","https://openalex.org/W2803699894","https://openalex.org/W2805513150","https://openalex.org/W2883767406","https://openalex.org/W2886229822","https://openalex.org/W2893787701","https://openalex.org/W2907369724","https://openalex.org/W2942994520","https://openalex.org/W2943600592","https://openalex.org/W2943972251","https://openalex.org/W2948212638","https://openalex.org/W2950834624","https://openalex.org/W2955930769","https://openalex.org/W2966283550","https://openalex.org/W2972977227","https://openalex.org/W2999117455","https://openalex.org/W3011118870","https://openalex.org/W3023299375","https://openalex.org/W3023345649","https://openalex.org/W3024544647","https://openalex.org/W3027888781","https://openalex.org/W4255156463","https://openalex.org/W6750958122","https://openalex.org/W6777589872"],"related_works":["https://openalex.org/W2555858522","https://openalex.org/W2966882612","https://openalex.org/W2621581718","https://openalex.org/W2607381621","https://openalex.org/W2475431094","https://openalex.org/W2911731864","https://openalex.org/W4229025366","https://openalex.org/W2889529422","https://openalex.org/W3027062455","https://openalex.org/W2767174288"],"abstract_inverted_index":{"Identification":[0],"of":[1,17,33,122,159],"microRNA":[2,8,34,48,106,137],"regulatory":[3,10,35,49,107,138],"modules":[4,50,139],"can":[5],"help":[6],"decipher":[7],"synergistic":[9],"mechanism":[11],"in":[12,63],"the":[13,31,79,111,136],"development":[14],"and":[15,83,114,147],"progression":[16],"complex":[18],"diseases,":[19],"especially":[20],"cancers.":[21],"Experimentally":[22],"validated":[23],"microRNA-target":[24,59,75,96],"interactions":[25],"provide":[26],"strong":[27],"direct":[28],"evidence":[29],"for":[30],"analysis":[32],"functions.":[36],"We":[37,109],"here":[38],"developed":[39],"a":[40],"novel":[41],"computational":[42],"framework":[43,113],"named":[44],"CMIN":[45,61,142,160],"to":[46,72,90,93],"identify":[47],"by":[51,141],"performing":[52],"link":[53],"clustering":[54,88],"on":[55,119],"such":[56],"experimentally":[57],"verified":[58],"interactions.":[60],"runs":[62],"two":[64],"main":[65],"steps:":[66],"it":[67],"first":[68],"utilizes":[69],"convolutional":[70],"autoencoders":[71],"extract":[73],"high-level":[74],"interaction":[76,91],"features":[77],"from":[78,126],"expression":[80],"profile":[81],"data,":[82],"then":[84],"applied":[85],"affinity":[86],"propagation":[87],"algorithm":[89],"feature":[92],"obtain":[94],"overlapping":[95],"clusters.":[97],"Clusters":[98],"with":[99,152],"significant":[100],"synergy":[101],"correlations":[102],"are":[103,161],"considered":[104],"as":[105],"modules.":[108],"tested":[110],"proposed":[112],"other":[115,153],"three":[116,120],"existing":[117],"methods":[118],"types":[121],"cancer":[123],"data":[124],"sets":[125],"TCGA":[127],"(The":[128],"Cancer":[129],"Genome":[130],"Atlas).":[131],"The":[132,156],"results":[133],"showed":[134],"that":[135],"detected":[140],"exhibit":[143],"stronger":[144],"topological":[145],"correlation":[146],"more":[148],"functional":[149],"enrichment":[150],"compared":[151],"methods.":[154],"Availability:":[155],"supplementary":[157],"files":[158],"available":[162],"at":[163],"https://github.com/snryou/CMIN.":[164]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
