{"id":"https://openalex.org/W3045672559","doi":"https://doi.org/10.1109/access.2020.3012682","title":"A Novel Network-Based Computational Model for Prediction of Essential Proteins","display_name":"A Novel Network-Based Computational Model for Prediction of Essential Proteins","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3045672559","doi":"https://doi.org/10.1109/access.2020.3012682","mag":"3045672559"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.3012682","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3012682","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1109/access.2020.3012682","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054673234","display_name":"Xianyou Zhu","orcid":"https://orcid.org/0000-0001-8657-2226"},"institutions":[{"id":"https://openalex.org/I149735164","display_name":"Hengyang Normal University","ror":"https://ror.org/006bvjm48","country_code":"CN","type":"education","lineage":["https://openalex.org/I149735164"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianyou Zhu","raw_affiliation_strings":["Hunan Provincial Key Laboratory of Intelligent Information Processing and Application, Hengyang Normal University, Hengyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hunan Provincial Key Laboratory of Intelligent Information Processing and Application, Hengyang Normal University, Hengyang, China","institution_ids":["https://openalex.org/I149735164"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100355685","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0001-7112-8632"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000687523","display_name":"Tingrui Pei","orcid":"https://orcid.org/0000-0002-1205-5899"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingrui Pei","raw_affiliation_strings":["Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":"https://orcid.org/0000-0002-1205-5899","affiliations":[{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100667267","display_name":"Zhiping Chen","orcid":"https://orcid.org/0000-0003-4759-3774"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiping Chen","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0003-4759-3774","affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100664390","display_name":"Xueyong Li","orcid":"https://orcid.org/0000-0002-9105-1764"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xueyong Li","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100710637","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-5065-8447"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wang Lei","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":"https://orcid.org/0000-0002-5065-8447","affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.0814,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.43625187,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":"8","issue":null,"first_page":"138141","last_page":"138148"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8002440333366394},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5517721176147461},{"id":"https://openalex.org/keywords/pagerank","display_name":"PageRank","score":0.4874170124530792},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4847657084465027},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.46227961778640747},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4267125725746155},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3688995838165283},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3090691566467285},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10621300339698792},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08235925436019897}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8002440333366394},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5517721176147461},{"id":"https://openalex.org/C2779172887","wikidata":"https://www.wikidata.org/wiki/Q184316","display_name":"PageRank","level":2,"score":0.4874170124530792},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4847657084465027},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.46227961778640747},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4267125725746155},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3688995838165283},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3090691566467285},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10621300339698792},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08235925436019897},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.3012682","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3012682","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:14722bf27ee944ae9c8550bf46d7a13f","is_oa":true,"landing_page_url":"https://doaj.org/article/14722bf27ee944ae9c8550bf46d7a13f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 138141-138148 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.3012682","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3012682","pdf_url":null,"source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2346887922","display_name":null,"funder_award_id":"2019JJ70010","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G3107359239","display_name":null,"funder_award_id":"61873221","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4652393474","display_name":"\u79fb\u52a8\u7269\u8054\u7f51\u4e2d\u57fa\u4e8e\u5bf9\u79f0\u5bc6\u94a5\u673a\u5236\u7684\u53ef\u9a8c\u8bc1\u9690\u79c1\u4fdd\u62a4\u6280\u672f\u7814\u7a76","funder_award_id":"61672447","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1503938960","https://openalex.org/W1970173121","https://openalex.org/W1973758399","https://openalex.org/W1979104937","https://openalex.org/W1986310535","https://openalex.org/W1999808266","https://openalex.org/W2007245700","https://openalex.org/W2017975254","https://openalex.org/W2021149413","https://openalex.org/W2025971310","https://openalex.org/W2050721857","https://openalex.org/W2060816398","https://openalex.org/W2074443723","https://openalex.org/W2089125183","https://openalex.org/W2100334995","https://openalex.org/W2105089945","https://openalex.org/W2119114096","https://openalex.org/W2125580930","https://openalex.org/W2132582966","https://openalex.org/W2142437744","https://openalex.org/W2150318080","https://openalex.org/W2162891889","https://openalex.org/W2366721369","https://openalex.org/W2508854983","https://openalex.org/W2740778459","https://openalex.org/W2765950793","https://openalex.org/W2790765877","https://openalex.org/W2809363952","https://openalex.org/W2888358121","https://openalex.org/W2889313194","https://openalex.org/W2952874336","https://openalex.org/W2962928958","https://openalex.org/W2999995105"],"related_works":["https://openalex.org/W2154222238","https://openalex.org/W2106626222","https://openalex.org/W2980866815","https://openalex.org/W1562405179","https://openalex.org/W2125493559","https://openalex.org/W1544909909","https://openalex.org/W2002053721","https://openalex.org/W2001641889","https://openalex.org/W2953330010","https://openalex.org/W3082083992"],"abstract_inverted_index":{"Identification":[0],"of":[1,17,86,149,156,181,187],"essential":[2,32,51,140,224],"proteins":[3,19,33,52,99,118,195,225],"is":[4,20,65],"important":[5],"for":[6,30,49,222],"understanding":[7],"cell":[8],"survival":[9],"and":[10,40,43,82,119,171,184,192],"development,":[11],"because":[12],"even":[13],"if":[14],"only":[15,199],"one":[16],"these":[18],"missing,":[21],"organisms":[22],"cannot":[23],"survive":[24],"or":[25],"develop.":[26],"Since":[27],"traditional":[28],"methods":[29],"identifying":[31,223],"based":[34,76,100,113,125,166],"on":[35,77,101,114,126,167],"biological":[36],"experiments":[37],"are":[38,47,200],"costly":[39],"inefficient,":[41],"more":[42,44],"computational":[45,61],"models":[46,162],"proposed":[48],"predicting":[50],"in":[53,67,143,163,226],"recent":[54],"years.":[55],"In":[56],"this":[57],"paper,":[58],"a":[59,106],"novel":[60],"model":[62,221],"called":[63],"BSPM":[64,157,176,214],"proposed,":[66],"which,":[68],"an":[69,219],"original":[70,88,121],"PPI":[71,89,108,122,129],"network":[72,90,109],"will":[73,91,134],"be":[74,92,111,135,216],"built":[75],"known":[78],"protein-protein":[79],"associations":[80],"first,":[81],"then":[83],"topology":[84],"information":[85],"the":[87,96,102,115,120,127,131,147,154,164,188,227],"adopted":[93],"to":[94,137,145],"measure":[95],"similarities":[97,116],"between":[98,117],"SimRank":[103],"algorithm.":[104],"Thereafter,":[105],"weighted":[107,128],"can":[110,177,215],"obtained":[112],"network.":[123],"Finally,":[124],"network,":[130],"PageRank":[132],"algorithm":[133],"used":[136,217],"infer":[138],"potential":[139],"proteins.":[141],"Moreover,":[142],"order":[144],"evaluate":[146],"performance":[148,155],"BSPM,":[150],"we":[151],"have":[152],"compared":[153],"with":[158],"14":[159,205],"classical":[160,207],"prediction":[161,179,208],"field":[165],"two":[168],"different":[169],"databases,":[170],"experimental":[172],"results":[173],"show":[174],"that":[175,213],"achieve":[178],"accuracies":[180],"92%,":[182],"81%":[183],"76%":[185],"out":[186],"top":[189],"100,":[190],"200":[191],"300":[193],"candidate":[194],"separately,":[196],"which":[197],"not":[198],"significantly":[201],"better":[202],"than":[203],"those":[204],"competitive":[206],"models,":[209],"but":[210],"also":[211],"means":[212],"as":[218],"effective":[220],"future.":[228]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
