{"id":"https://openalex.org/W3038720525","doi":"https://doi.org/10.1109/access.2020.3006998","title":"Degree-Based Similarity Indexes for Identifying Potential miRNA-Disease Associations","display_name":"Degree-Based Similarity Indexes for Identifying Potential miRNA-Disease Associations","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3038720525","doi":"https://doi.org/10.1109/access.2020.3006998","mag":"3038720525"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.3006998","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3006998","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09133264.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09133264.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006543131","display_name":"Yajie Meng","orcid":"https://orcid.org/0000-0002-2384-1158"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yajie Meng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-2384-1158","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030110245","display_name":"Min Jin","orcid":"https://orcid.org/0000-0002-4858-8048"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Jin","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-4858-8048","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016425036","display_name":"Xianfang Tang","orcid":"https://orcid.org/0000-0002-6895-2898"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianfang Tang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066469263","display_name":"Junlin Xu","orcid":"https://orcid.org/0000-0003-1057-1504"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junlin Xu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0003-1057-1504","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I16609230"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.4779,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.56525365,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":null,"first_page":"133170","last_page":"133179"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.624714195728302},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5525397062301636},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5429340600967407},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4855961203575134},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.43609124422073364},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32956385612487793},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2737167775630951},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23080459237098694},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21976187825202942},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1402987837791443},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13169220089912415},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10354283452033997}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.624714195728302},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5525397062301636},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5429340600967407},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4855961203575134},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.43609124422073364},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32956385612487793},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2737167775630951},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23080459237098694},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21976187825202942},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1402987837791443},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13169220089912415},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10354283452033997},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.3006998","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3006998","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09133264.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:cc99179d5ab9404593f9adeef546ad0a","is_oa":true,"landing_page_url":"https://doaj.org/article/cc99179d5ab9404593f9adeef546ad0a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 133170-133179 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.3006998","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3006998","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09133264.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8436765734","display_name":null,"funder_award_id":"61773157","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3038720525.pdf","grobid_xml":"https://content.openalex.org/works/W3038720525.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W955243042","https://openalex.org/W1577392641","https://openalex.org/W1648301895","https://openalex.org/W1763867024","https://openalex.org/W1920303762","https://openalex.org/W1958432196","https://openalex.org/W1965256565","https://openalex.org/W1973938657","https://openalex.org/W2022732522","https://openalex.org/W2045692024","https://openalex.org/W2103151642","https://openalex.org/W2109032096","https://openalex.org/W2110234420","https://openalex.org/W2125536613","https://openalex.org/W2126619650","https://openalex.org/W2129158737","https://openalex.org/W2132694427","https://openalex.org/W2141222510","https://openalex.org/W2153210075","https://openalex.org/W2158135353","https://openalex.org/W2170730747","https://openalex.org/W2258129851","https://openalex.org/W2287258341","https://openalex.org/W2295902753","https://openalex.org/W2312716214","https://openalex.org/W2336069911","https://openalex.org/W2414762794","https://openalex.org/W2516934006","https://openalex.org/W2537429907","https://openalex.org/W2607159126","https://openalex.org/W2624752195","https://openalex.org/W2750900465","https://openalex.org/W2765950793","https://openalex.org/W2767178841","https://openalex.org/W2780584018","https://openalex.org/W2793459592","https://openalex.org/W2805950880","https://openalex.org/W2809363952","https://openalex.org/W2890233524","https://openalex.org/W2890728516","https://openalex.org/W2901312953","https://openalex.org/W2936144882","https://openalex.org/W2942082579","https://openalex.org/W2972020367","https://openalex.org/W2996338703","https://openalex.org/W3005517003","https://openalex.org/W3007573310","https://openalex.org/W3021586058","https://openalex.org/W3021640804","https://openalex.org/W3146565636","https://openalex.org/W4232932184","https://openalex.org/W4246271082"],"related_works":["https://openalex.org/W2737319532","https://openalex.org/W4392896533","https://openalex.org/W2062945643","https://openalex.org/W2050308539","https://openalex.org/W3151405604","https://openalex.org/W4241694095","https://openalex.org/W2330252996","https://openalex.org/W2793648706","https://openalex.org/W3043187607","https://openalex.org/W2038886521"],"abstract_inverted_index":{"Identifying":[0],"disease-associated":[1,18],"miRNAs":[2,19],"is":[3,34],"helpful":[4],"to":[5],"explore":[6],"the":[7,15,21,58,61,75,89,98,103,120,123],"pathogenesis":[8],"of":[9,14,23,31,122,135,142],"diseases.":[10],"However,":[11],"without":[12,65],"foreknowledge":[13],"experimentally":[16],"valid":[17],"information,":[20],"development":[22],"promising":[24],"and":[25,42,60,84,93,101,115,139,149],"affordable":[26],"approaches":[27],"for":[28,49,158],"effective":[29],"treatment":[30],"human":[32],"diseases":[33],"challenging.":[35],"In":[36,146],"this":[37],"study,":[38],"we":[39],"develop":[40],"DCNMDA":[41,87,148],"DJMDA,":[43],"a":[44,126,152],"degree-based":[45,154],"similarity":[46,59,155],"indexes":[47],"methodology":[48],"identifying":[50,159],"potential":[51,160],"miRNAs-disease":[52,161],"associations.":[53],"We":[54],"solely":[55],"focused":[56],"on":[57,81,97],"degree":[62],"between":[63],"nodes":[64],"adopting":[66],"negative":[67],"samples":[68],"or":[69],"other":[70],"external":[71],"prior":[72],"information":[73],"beyond":[74],"miRNA-disease":[76],"associations":[77,162],"bipartite":[78],"network.":[79],"Trained":[80],"HMDD":[82,85],"v2.0":[83],"v3.0,":[86],"achieved":[88],"highest":[90],"AUCs":[91],"(0.9237":[92],"0.9432,":[94],"respectively)":[95],"based":[96],"5-fold":[99],"cross-validation":[100],"outperformed":[102],"published":[104],"state-of-the-art":[105],"methodologies.":[106],"Moreover,":[107],"case":[108],"studies":[109],"about":[110],"breast":[111],"neoplasms,":[112,114],"lung":[113],"ovarian":[116],"neoplasms":[117],"further":[118],"evaluate":[119],"reliability":[121],"models.":[124],"As":[125],"result,":[127],"biological":[128],"experiments":[129],"can":[130],"correspondingly":[131],"verify":[132],"28":[133],"out":[134,141],"top-30":[136,143],"DJMDA-predicted":[137],"MDAs":[138],"29":[140],"DCNMDA-predicted":[144],"MDAs.":[145],"summary,":[147],"DJMDA":[150],"offer":[151],"powerful":[153],"index":[156],"approach":[157],"with":[163],"superior":[164],"performance.":[165]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
