{"id":"https://openalex.org/W3036278095","doi":"https://doi.org/10.1109/access.2020.3002995","title":"A CNN-Based RNA N6-Methyladenosine Site Predictor for Multiple Species Using Heterogeneous Features Representation","display_name":"A CNN-Based RNA N6-Methyladenosine Site Predictor for Multiple Species Using Heterogeneous Features Representation","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3036278095","doi":"https://doi.org/10.1109/access.2020.3002995","mag":"3036278095"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.3002995","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3002995","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09119435.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09119435.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087172301","display_name":"Waleed Alam","orcid":"https://orcid.org/0000-0001-8622-4985"},"institutions":[{"id":"https://openalex.org/I80611190","display_name":"Jeonbuk National University","ror":"https://ror.org/05q92br09","country_code":"KR","type":"education","lineage":["https://openalex.org/I80611190"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Waleed Alam","raw_affiliation_strings":["Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea"],"raw_orcid":"https://orcid.org/0000-0001-8622-4985","affiliations":[{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea","institution_ids":["https://openalex.org/I80611190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076289546","display_name":"Syed Danish Ali","orcid":"https://orcid.org/0000-0001-5204-5073"},"institutions":[{"id":"https://openalex.org/I146840658","display_name":"University of Azad Jammu and Kashmir","ror":"https://ror.org/015566d55","country_code":"PK","type":"education","lineage":["https://openalex.org/I146840658"]},{"id":"https://openalex.org/I80611190","display_name":"Jeonbuk National University","ror":"https://ror.org/05q92br09","country_code":"KR","type":"education","lineage":["https://openalex.org/I80611190"]}],"countries":["KR","PK"],"is_corresponding":false,"raw_author_name":"Syed Danish Ali","raw_affiliation_strings":["Department of Electrical Engineering, The University of Azad Jammu & Kashmir, Muzaffarabad, Pakistan","Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea"],"raw_orcid":"https://orcid.org/0000-0001-5204-5073","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, The University of Azad Jammu & Kashmir, Muzaffarabad, Pakistan","institution_ids":["https://openalex.org/I146840658"]},{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea","institution_ids":["https://openalex.org/I80611190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008953921","display_name":"Hilal Tayara","orcid":"https://orcid.org/0000-0001-5678-3479"},"institutions":[{"id":"https://openalex.org/I80611190","display_name":"Jeonbuk National University","ror":"https://ror.org/05q92br09","country_code":"KR","type":"education","lineage":["https://openalex.org/I80611190"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hilal Tayara","raw_affiliation_strings":["Advanced Electronics and Information Research Center, Jeonbuk National University, Jeonju, South Korea","Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea"],"raw_orcid":"https://orcid.org/0000-0001-5678-3479","affiliations":[{"raw_affiliation_string":"Advanced Electronics and Information Research Center, Jeonbuk National University, Jeonju, South Korea","institution_ids":["https://openalex.org/I80611190"]},{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea","institution_ids":["https://openalex.org/I80611190"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031342322","display_name":"Kil To Chong","orcid":"https://orcid.org/0000-0002-1952-0001"},"institutions":[{"id":"https://openalex.org/I80611190","display_name":"Jeonbuk National University","ror":"https://ror.org/05q92br09","country_code":"KR","type":"education","lineage":["https://openalex.org/I80611190"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kil to Chong","raw_affiliation_strings":["Advanced Electronics and Information Research Center, Jeonbuk National University, Jeonju, South Korea","Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea"],"raw_orcid":"https://orcid.org/0000-0002-1952-0001","affiliations":[{"raw_affiliation_string":"Advanced Electronics and Information Research Center, Jeonbuk National University, Jeonju, South Korea","institution_ids":["https://openalex.org/I80611190"]},{"raw_affiliation_string":"Department of Electronics and Information Engineering, Jeonbuk National University, Jeonju, South Korea","institution_ids":["https://openalex.org/I80611190"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":4.2516,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.9539654,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"8","issue":null,"first_page":"138203","last_page":"138209"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7608950138092041},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.7148582935333252},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7041219472885132},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5763775706291199},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5647165179252625},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.5198271870613098},{"id":"https://openalex.org/keywords/n6-methyladenosine","display_name":"N6-Methyladenosine","score":0.5046190023422241},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.480981707572937},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4495604336261749},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4372754693031311},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.427154004573822},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4131212532520294},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.36076369881629944},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22576898336410522},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19430464506149292},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11885887384414673}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7608950138092041},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.7148582935333252},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7041219472885132},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5763775706291199},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5647165179252625},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.5198271870613098},{"id":"https://openalex.org/C2775963939","wikidata":"https://www.wikidata.org/wiki/Q6951996","display_name":"N6-Methyladenosine","level":5,"score":0.5046190023422241},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.480981707572937},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4495604336261749},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4372754693031311},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.427154004573822},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4131212532520294},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.36076369881629944},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22576898336410522},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19430464506149292},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11885887384414673},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C91965660","wikidata":"https://www.wikidata.org/wiki/Q415875","display_name":"Methyltransferase","level":4,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.3002995","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3002995","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09119435.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:8c83918faa0c436c9652465246c04fb1","is_oa":true,"landing_page_url":"https://doaj.org/article/8c83918faa0c436c9652465246c04fb1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 138203-138209 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.3002995","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.3002995","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09119435.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2147753834","display_name":null,"funder_award_id":"NRF-2017M3C7A1044816","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G7144470285","display_name":null,"funder_award_id":"NRF-2017M3C7A1044816","funder_id":"https://openalex.org/F4320328359","funder_display_name":"Ministry of Science and ICT, South Korea"},{"id":"https://openalex.org/G8509831517","display_name":null,"funder_award_id":"NRF-2017M3C7A1044816","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3036278095.pdf","grobid_xml":"https://content.openalex.org/works/W3036278095.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1186776093","https://openalex.org/W1981629946","https://openalex.org/W1991058622","https://openalex.org/W1991807334","https://openalex.org/W2002458471","https://openalex.org/W2034286722","https://openalex.org/W2035905956","https://openalex.org/W2041328373","https://openalex.org/W2045281368","https://openalex.org/W2065847836","https://openalex.org/W2078964320","https://openalex.org/W2079735306","https://openalex.org/W2096867044","https://openalex.org/W2136016850","https://openalex.org/W2158899491","https://openalex.org/W2163605009","https://openalex.org/W2205505631","https://openalex.org/W2292706259","https://openalex.org/W2415310056","https://openalex.org/W2783279948","https://openalex.org/W2804672687","https://openalex.org/W2884524796","https://openalex.org/W2896699990","https://openalex.org/W2897898606","https://openalex.org/W2898250372","https://openalex.org/W2900694973","https://openalex.org/W2904497009","https://openalex.org/W2915489297","https://openalex.org/W2925252074","https://openalex.org/W2932524182","https://openalex.org/W2937997287","https://openalex.org/W2940473304","https://openalex.org/W2952230511","https://openalex.org/W2953169496","https://openalex.org/W2964874436","https://openalex.org/W2965952014","https://openalex.org/W2969662046","https://openalex.org/W2976262693","https://openalex.org/W2994619710","https://openalex.org/W3009820544","https://openalex.org/W6683738474","https://openalex.org/W6684191040","https://openalex.org/W6749954789"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W3174372895","https://openalex.org/W2130974462","https://openalex.org/W972276598","https://openalex.org/W4246352526","https://openalex.org/W2028665553","https://openalex.org/W4230315250","https://openalex.org/W2086519370"],"abstract_inverted_index":{"Post-transcriptional":[0],"modification":[1],"such":[2],"as":[3],"N6-methyladenosine":[4],"(m6A)":[5],"has":[6],"a":[7,76],"crucial":[8],"role":[9],"in":[10,185],"the":[11,19,28,50,56,63,69,83,94,101,106,132,140,157,182],"stability":[12],"and":[13,66,78,113,122,129,153,170],"regulation":[14],"of":[15,21,31,72,85,146,160],"gene":[16],"expression.":[17],"Therefore,":[18],"identification":[20,70,84],"m6A":[22,86,186],"is":[23,91,120,196],"highly":[24],"required":[25],"for":[26,82],"understanding":[27],"functional":[29],"mechanisms":[30],"biological":[32],"processes.":[33],"Several":[34],"machine":[35],"learning":[36],"techniques":[37,61],"based":[38,92],"on":[39,93,124,156],"handy":[40],"craft":[41],"feature":[42,58],"extraction":[43],"methods":[44],"have":[45],"been":[46],"proposed":[47,89,118,141,175],"to":[48,55,180,192],"facilitate":[49,181],"laborious":[51],"work.":[52],"However,":[53],"due":[54],"inefficient":[57],"extraction,":[59],"these":[60],"increase":[62],"computational":[64],"complexity":[65],"thereby":[67],"affect":[68],"accuracy":[71,145],"m6A.This":[73],"paper":[74],"proposes":[75],"fast":[77],"reliable":[79],"predictive":[80,134],"model":[81,90,119,142,176],"sites.":[87],"The":[88,117,136],"convolutional":[95],"neural":[96],"network":[97],"(CNN)":[98],"which":[99],"extracts":[100],"most":[102],"significant":[103],"features":[104],"from":[105],"RNA":[107],"sequences":[108],"encoded":[109],"by":[110],"concatenating":[111],"one-hot":[112],"nucleotide":[114],"chemical":[115],"properties.":[116],"applied":[121],"tested":[123],"multiple":[125],"species":[126],"benchmark":[127,158],"datasets":[128,159],"evaluated":[130],"against":[131],"state-of-art":[133],"models.":[135],"results":[137],"indicate":[138],"that":[139],"achieves":[143],"high":[144],"93.6":[147],"%,":[148,150],"93.8":[149],"85.0":[151],"%":[152,155],"92.5":[154],"Homo":[161],"sapiens":[162],"(H.sapien),":[163],"Mus":[164],"musculus":[165],"(M.musculs),":[166],"Saccharomyces":[167],"cerevisiae":[168],"(S.cerevisiae),":[169],"Arabidopsis":[171],"thaliana":[172],"(A.thaliana),":[173],"respectively.The":[174],"could":[177],"be":[178],"used":[179],"researcher's":[183],"community":[184],"identification.":[187],"In":[188],"addition,":[189],"an":[190],"easy":[191],"use":[193],"web":[194],"server":[195],"made":[197],"available":[198],"at":[199],"https://home.jbnu.ac.kr/NSCL/pm6acnn.htm.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":23},{"year":2020,"cited_by_count":6}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
