{"id":"https://openalex.org/W3034138387","doi":"https://doi.org/10.1109/access.2020.2999079","title":"Mining Domain Knowledge: Improved Framework Towards Automatically Standardizing Anatomical Structure Nomenclature in Radiotherapy","display_name":"Mining Domain Knowledge: Improved Framework Towards Automatically Standardizing Anatomical Structure Nomenclature in Radiotherapy","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3034138387","doi":"https://doi.org/10.1109/access.2020.2999079","mag":"3034138387"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2999079","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2999079","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09104998.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09104998.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101440567","display_name":"Qiming Yang","orcid":"https://orcid.org/0000-0002-9505-1649"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Qiming Yang","raw_affiliation_strings":["Department of Radiation Oncology, Medical Artificial Intelligence and Automation Laboratory, University of Texas Southwestern Medical Center, Dallas, USA","School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-9505-1649","affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, Medical Artificial Intelligence and Automation Laboratory, University of Texas Southwestern Medical Center, Dallas, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061525421","display_name":"Hongyang Chao","orcid":"https://orcid.org/0000-0002-6104-2322"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Hongyang Chao","raw_affiliation_strings":["Department of Radiation Oncology, Medical Artificial Intelligence and Automation Laboratory, University of Texas Southwestern Medical Center, Dallas, USA","School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-6104-2322","affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, Medical Artificial Intelligence and Automation Laboratory, University of Texas Southwestern Medical Center, Dallas, USA","institution_ids":["https://openalex.org/I867280407"]},{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081307285","display_name":"Dan Nguyen","orcid":"https://orcid.org/0000-0002-9590-0655"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dan Nguyen","raw_affiliation_strings":["Department of Radiation Oncology, Medical Artificial Intelligence and Automation Laboratory, University of Texas Southwestern Medical Center, Dallas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, Medical Artificial Intelligence and Automation Laboratory, University of Texas Southwestern Medical Center, Dallas, USA","institution_ids":["https://openalex.org/I867280407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018120191","display_name":"Steve Jiang","orcid":"https://orcid.org/0000-0002-3083-6752"},"institutions":[{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steve Jiang","raw_affiliation_strings":["Department of Radiation Oncology, Medical Artificial Intelligence and Automation Laboratory, University of Texas Southwestern Medical Center, Dallas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Radiation Oncology, Medical Artificial Intelligence and Automation Laboratory, University of Texas Southwestern Medical Center, Dallas, USA","institution_ids":["https://openalex.org/I867280407"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.6828,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.65398855,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"8","issue":null,"first_page":"105286","last_page":"105300"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8153601884841919},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.7220926284790039},{"id":"https://openalex.org/keywords/generalizability-theory","display_name":"Generalizability theory","score":0.5479151010513306},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5452731847763062},{"id":"https://openalex.org/keywords/voting","display_name":"Voting","score":0.541175365447998},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5185664296150208},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.4588949680328369},{"id":"https://openalex.org/keywords/weighted-voting","display_name":"Weighted voting","score":0.42640185356140137},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4107978343963623},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3529491424560547}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8153601884841919},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.7220926284790039},{"id":"https://openalex.org/C27158222","wikidata":"https://www.wikidata.org/wiki/Q5532422","display_name":"Generalizability theory","level":2,"score":0.5479151010513306},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5452731847763062},{"id":"https://openalex.org/C520049643","wikidata":"https://www.wikidata.org/wiki/Q189760","display_name":"Voting","level":3,"score":0.541175365447998},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5185664296150208},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.4588949680328369},{"id":"https://openalex.org/C132778050","wikidata":"https://www.wikidata.org/wiki/Q2065430","display_name":"Weighted voting","level":4,"score":0.42640185356140137},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4107978343963623},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3529491424560547},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2999079","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2999079","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09104998.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:1b545199f3e448fcb51b8997a3a0bea6","is_oa":true,"landing_page_url":"https://doaj.org/article/1b545199f3e448fcb51b8997a3a0bea6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 105286-105300 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2999079","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2999079","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09104998.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"No poverty","id":"https://metadata.un.org/sdg/1","score":0.5}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3034138387.pdf","grobid_xml":"https://content.openalex.org/works/W3034138387.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W1489345454","https://openalex.org/W1522301498","https://openalex.org/W1534408902","https://openalex.org/W1677182931","https://openalex.org/W1686810756","https://openalex.org/W2012708547","https://openalex.org/W2046757928","https://openalex.org/W2054580590","https://openalex.org/W2080593651","https://openalex.org/W2083927153","https://openalex.org/W2087347434","https://openalex.org/W2112796928","https://openalex.org/W2112884386","https://openalex.org/W2115167851","https://openalex.org/W2136829301","https://openalex.org/W2163605009","https://openalex.org/W2171706135","https://openalex.org/W2177262874","https://openalex.org/W2194303854","https://openalex.org/W2194775991","https://openalex.org/W2245277674","https://openalex.org/W2252046212","https://openalex.org/W2341237357","https://openalex.org/W2524399695","https://openalex.org/W2531793696","https://openalex.org/W2549139847","https://openalex.org/W2593013519","https://openalex.org/W2596339904","https://openalex.org/W2600642189","https://openalex.org/W2774576524","https://openalex.org/W2781815650","https://openalex.org/W2786622092","https://openalex.org/W2795144650","https://openalex.org/W2893813411","https://openalex.org/W2896804544","https://openalex.org/W2898091194","https://openalex.org/W2900237898","https://openalex.org/W2928165649","https://openalex.org/W2949736877","https://openalex.org/W2961018736","https://openalex.org/W2962914239","https://openalex.org/W2963091558","https://openalex.org/W2963351448","https://openalex.org/W2963446712","https://openalex.org/W2981036610","https://openalex.org/W2984306354","https://openalex.org/W2989701968","https://openalex.org/W4205953786","https://openalex.org/W4235243453","https://openalex.org/W4295312788","https://openalex.org/W4308831279","https://openalex.org/W4385245566","https://openalex.org/W6631190155","https://openalex.org/W6637373629","https://openalex.org/W6684191040","https://openalex.org/W6684936967","https://openalex.org/W6690599665","https://openalex.org/W6739901393","https://openalex.org/W6747008013","https://openalex.org/W6748230616","https://openalex.org/W6749904568","https://openalex.org/W6755837410","https://openalex.org/W6756444276","https://openalex.org/W6761176859","https://openalex.org/W6766978945"],"related_works":["https://openalex.org/W2008876309","https://openalex.org/W2010932316","https://openalex.org/W1497951756","https://openalex.org/W2052960815","https://openalex.org/W2069544111","https://openalex.org/W4297849332","https://openalex.org/W2069633578","https://openalex.org/W3123813590","https://openalex.org/W3123414640","https://openalex.org/W3123839196"],"abstract_inverted_index":{"The":[0,100,203,230],"automatic":[1],"standardization":[2,68],"of":[3,26,79,191,224],"nomenclature":[4,67,239],"for":[5,17,194],"anatomical":[6],"structures":[7],"in":[8,23,54,189,227,236,245],"radiotherapy":[9],"(RT)":[10],"clinical":[11,55,243],"data":[12,18,28,82,119,127],"is":[13,34],"a":[14,195],"critical":[15],"prerequisite":[16],"curation":[19],"and":[20,29,51,88,94,106,172,222],"data-driven":[21,242],"research":[22,244],"the":[24,136,140,152,166,177,180,183,220,225],"era":[25],"big":[27],"artificial":[30],"intelligence,":[31],"but":[32],"it":[33],"currently":[35],"an":[36,64,80,95,129],"unmet":[37],"need.":[38],"Existing":[39],"methods":[40],"either":[41],"cannot":[42],"handle":[43],"cross-institutional":[44,144],"datasets":[45,145,169],"or":[46],"suffer":[47],"from":[48,128],"heavy":[49],"imbalance":[50],"poor-quality":[52],"delineation":[53],"RT":[56],"datasets.":[57],"To":[58],"solve":[59],"these":[60],"problems,":[61],"we":[62,218,232],"propose":[63],"automated":[65],"structure":[66,238],"framework,":[69],"3D":[70],"Non-local":[71],"Network":[72],"with":[73,92,116,198],"Voting":[74],"(3DNNV).":[75],"This":[76],"framework":[77,101,226,231],"consists":[78],"improved":[81],"processing":[83],"strategy,":[84],"namely,":[85],"adaptive":[86,89],"sampling":[87],"cropping":[90],"(ASAC)":[91],"voting,":[93],"optimized":[96],"feature":[97],"extraction":[98],"module.":[99],"simulates":[102],"clinicians'":[103],"domain":[104],"knowledge":[105],"recognition":[107],"mechanisms":[108],"to":[109,134,146,187,211,240],"identify":[110,212],"small-volume":[111,196],"organs":[112],"at":[113],"risk":[114],"(OARs)":[115],"heavily":[117],"imbalanced":[118],"better":[120],"than":[121],"other":[122],"methods.":[123],"We":[124],"used":[125],"partial":[126],"open-source":[130],"head-and-neck":[131],"cancer":[132,246],"dataset":[133],"train":[135],"model,":[137,154],"then":[138],"tested":[139],"model":[141],"on":[142,165,182],"three":[143,167],"demonstrate":[147],"its":[148],"generalizability.":[149],"3DNNV":[150,178,207],"outperformed":[151,179],"baseline":[153,181],"achieving":[155],"higher":[156],"average":[157],"true":[158],"positive":[159],"rates":[160],"(TPR)":[161],"over":[162],"all":[163],"categories":[164],"test":[168,184],"(+8.27%,":[170],"+2.39%,":[171],"+5.53%,":[173],"respectively).":[174],"More":[175],"importantly,":[176],"dataset,":[185],"28.63%":[186],"91.17%,":[188],"terms":[190],"F1":[192],"score":[193],"OAR":[197],"only":[199],"9":[200],"training":[201],"samples.":[202],"results":[204],"show":[205],"that":[206],"can":[208,234],"be":[209],"applied":[210],"OARs,":[213],"even":[214],"error-prone":[215],"ones.":[216],"Furthermore,":[217],"discussed":[219],"limitations":[221],"applicability":[223],"practical":[228],"scenarios.":[229],"developed":[233],"assist":[235],"standardizing":[237],"facilitate":[241],"radiotherapy.":[247]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
