{"id":"https://openalex.org/W3024549885","doi":"https://doi.org/10.1109/access.2020.2993860","title":"An Iteration Method for Identifying Yeast Essential Proteins From Weighted PPI Network Based on Topological and Functional Features of Proteins","display_name":"An Iteration Method for Identifying Yeast Essential Proteins From Weighted PPI Network Based on Topological and Functional Features of Proteins","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3024549885","doi":"https://doi.org/10.1109/access.2020.2993860","mag":"3024549885"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2993860","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2993860","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09091185.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09091185.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090418343","display_name":"Shiyuan Li","orcid":"https://orcid.org/0000-0002-4381-7497"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shiyuan Li","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0002-4381-7497","affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100667267","display_name":"Zhiping Chen","orcid":"https://orcid.org/0009-0009-5061-6472"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiping Chen","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0003-4759-3774","affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101484794","display_name":"Xin He","orcid":null},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin He","raw_affiliation_strings":["Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":"https://orcid.org/0000-0002-9931-8398","affiliations":[{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100704406","display_name":"Zhen Zhang","orcid":"https://orcid.org/0000-0001-9629-9614"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Zhang","raw_affiliation_strings":["College of Electronic Information and Electrical Engineering, Changsha University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0001-9629-9614","affiliations":[{"raw_affiliation_string":"College of Electronic Information and Electrical Engineering, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000687523","display_name":"Tingrui Pei","orcid":"https://orcid.org/0000-0002-1205-5899"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingrui Pei","raw_affiliation_strings":["Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":"https://orcid.org/0000-0002-1205-5899","affiliations":[{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100605882","display_name":"Yihong Tan","orcid":"https://orcid.org/0000-0001-7619-8090"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yihong Tan","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China"],"raw_orcid":"https://orcid.org/0000-0001-7619-8090","affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100710637","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-5065-8447"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China"],"raw_orcid":"https://orcid.org/0000-0002-5065-8447","affiliations":[{"raw_affiliation_string":"College of Computer Engineering and Applied Mathematics, Changsha University, Changsha, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"Key Laboratory of Hunan Province for Internet of Things and Information Security, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5090418343"],"corresponding_institution_ids":["https://openalex.org/I198357462"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":1.0837,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.76097565,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"8","issue":null,"first_page":"90792","last_page":"90804"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.5605108737945557},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5223934650421143},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.46315398812294006},{"id":"https://openalex.org/keywords/molecular-biophysics","display_name":"Molecular biophysics","score":0.43610674142837524},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43374043703079224},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22673815488815308},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.22498828172683716},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19458994269371033},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.15194201469421387},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.09131351113319397}],"concepts":[{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.5605108737945557},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5223934650421143},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.46315398812294006},{"id":"https://openalex.org/C70636015","wikidata":"https://www.wikidata.org/wiki/Q4300350","display_name":"Molecular biophysics","level":2,"score":0.43610674142837524},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43374043703079224},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22673815488815308},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.22498828172683716},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19458994269371033},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.15194201469421387},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.09131351113319397}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2993860","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2993860","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09091185.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:17aab379765c4b7b8041ad008e80ae93","is_oa":true,"landing_page_url":"https://doaj.org/article/17aab379765c4b7b8041ad008e80ae93","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 90792-90804 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2993860","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2993860","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09091185.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2346887922","display_name":null,"funder_award_id":"2019JJ70010","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G3107359239","display_name":null,"funder_award_id":"61873221","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4652393474","display_name":"\u79fb\u52a8\u7269\u8054\u7f51\u4e2d\u57fa\u4e8e\u5bf9\u79f0\u5bc6\u94a5\u673a\u5236\u7684\u53ef\u9a8c\u8bc1\u9690\u79c1\u4fdd\u62a4\u6280\u672f\u7814\u7a76","funder_award_id":"61672447","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G636293411","display_name":null,"funder_award_id":"2018JJ4058","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7105814720","display_name":null,"funder_award_id":"2018JJ4058","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3024549885.pdf","grobid_xml":"https://content.openalex.org/works/W3024549885.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W828529927","https://openalex.org/W1967822181","https://openalex.org/W1970141274","https://openalex.org/W1970173121","https://openalex.org/W1973758399","https://openalex.org/W1975191997","https://openalex.org/W1986310535","https://openalex.org/W1988496202","https://openalex.org/W1996612368","https://openalex.org/W1999808266","https://openalex.org/W2007245700","https://openalex.org/W2015561307","https://openalex.org/W2017975254","https://openalex.org/W2021149413","https://openalex.org/W2036799174","https://openalex.org/W2050721857","https://openalex.org/W2059747206","https://openalex.org/W2074443723","https://openalex.org/W2082202339","https://openalex.org/W2087194317","https://openalex.org/W2088590769","https://openalex.org/W2089125183","https://openalex.org/W2105089945","https://openalex.org/W2116117181","https://openalex.org/W2119114096","https://openalex.org/W2130790725","https://openalex.org/W2132582966","https://openalex.org/W2154600255","https://openalex.org/W2159710443","https://openalex.org/W2162891889","https://openalex.org/W2234693397","https://openalex.org/W2333963790","https://openalex.org/W2478699542","https://openalex.org/W2531496612","https://openalex.org/W2547262106","https://openalex.org/W2581439210","https://openalex.org/W2613994501","https://openalex.org/W2738942170","https://openalex.org/W2751584274","https://openalex.org/W2775217026","https://openalex.org/W2905614462","https://openalex.org/W2910645973","https://openalex.org/W2931795699","https://openalex.org/W2952874336"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W261727187","https://openalex.org/W4240624121","https://openalex.org/W2124768480","https://openalex.org/W1985900993","https://openalex.org/W2385199909","https://openalex.org/W2068444965","https://openalex.org/W4234489124"],"abstract_inverted_index":{"Accumulating":[0],"studies":[1],"have":[2,29,57,178,226],"indicated":[3],"that":[4,191,228,251],"essential":[5,52,88,166,233],"proteins":[6,53,211,234],"play":[7],"critical":[8,127],"roles":[9],"in":[10,32,141,265],"numerous":[11],"biological":[12],"processes.":[13],"With":[14],"the":[15,37,62,142,172,204,216,229,241,252,262,266],"rapid":[16],"development":[17],"of":[18,24,39,47,65,123,156,175,184,197,203,232,247],"high-throughput":[19],"technologies,":[20],"a":[21,45,77],"large":[22],"number":[23],"Protein-Protein":[25],"Interaction":[26],"(PPI)":[27],"data":[28],"been":[30,58],"found":[31],"Saccharomyces":[33],"cerevisiae,":[34],"which":[35,213,249],"facilitate":[36],"formation":[38],"PPI":[40,55,93,101,119,144],"networks.":[41],"Up":[42],"to":[43,85,164,170,261],"now,":[44],"series":[46],"computational":[48,67],"methods":[49,68],"for":[50,138],"predicting":[51],"from":[54],"networks":[56,94,102,120],"proposed":[59,84],"successively.":[60],"However,":[61],"prediction":[63,79,186,195,217,223,230],"accuracy":[64,231],"these":[66,149],"is":[69,83],"still":[70],"not":[71],"quite":[72],"satisfactory.":[73],"In":[74,90,168],"this":[75],"paper,":[76],"novel":[78,253],"method":[80,254],"called":[81],"CVIM":[82,180,192,255],"infer":[86],"potential":[87],"proteins.":[89,167],"CVIM,":[91,176],"original":[92],"will":[95,135,161],"be":[96,136,162,236,257],"first":[97],"transferred":[98],"into":[99],"weighted":[100,118,143],"by":[103,220,239],"implementing":[104],"PCC":[105],"(Pearson":[106],"Correlation":[107],"Coefficient)":[108],"on":[109,117,148],"protein":[110,132,140,263],"gene":[111],"expression":[112],"data.":[113],"And":[114],"then,":[115],"based":[116,147],"and":[121,131,153,200,208,243],"information":[122],"orthologous":[124],"proteins,":[125,157,248],"some":[126],"network":[128,244],"topological":[129,152,245],"features":[130,134,155],"functional":[133,154,242],"extracted":[137,151],"each":[139],"network.":[145],"Finally,":[146],"newly":[150],"an":[158,258],"iterative":[159],"algorithm":[160],"designed":[163],"predict":[165],"order":[169],"evaluate":[171],"identification":[173],"performance":[174],"we":[177],"compared":[179],"with":[181],"13":[182],"kinds":[183],"state-of-the-art":[185,222],"methods.":[187,224],"Experimental":[188],"results":[189],"show":[190],"can":[193,235],"achieve":[194],"accuracies":[196,218],"92%,":[198],"80%":[199],"71%":[201],"out":[202],"top":[205],"1%,":[206],"5%":[207],"10%":[209],"candidate":[210],"separately,":[212],"significantly":[214],"outperform":[215],"achieved":[219],"those":[221],"We":[225],"demonstrated":[227],"effectively":[237],"improved":[238],"integrating":[240],"characteristics":[246],"means":[250],"may":[256],"excellent":[259],"addition":[260],"researches":[264],"future.":[267]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
