{"id":"https://openalex.org/W3021662303","doi":"https://doi.org/10.1109/access.2020.2993118","title":"A New TTZ Feature Extracting Algorithm to Decipher Tobacco Related Mutation Signature Genes for the Personalized Lung Adenocarcinoma Treatment","display_name":"A New TTZ Feature Extracting Algorithm to Decipher Tobacco Related Mutation Signature Genes for the Personalized Lung Adenocarcinoma Treatment","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3021662303","doi":"https://doi.org/10.1109/access.2020.2993118","mag":"3021662303"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2993118","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2993118","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09088982.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09088982.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100696912","display_name":"Qi\u2010En He","orcid":"https://orcid.org/0000-0002-1000-852X"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qien He","raw_affiliation_strings":["School of Chemical Engineering and Technology, Tianjin University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemical Engineering and Technology, Tianjin University, Tianjin, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036665865","display_name":"Zhe\u2010Wei Qiu","orcid":null},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]},{"id":"https://openalex.org/I99065089","display_name":"Tsinghua University","ror":"https://ror.org/03cve4549","country_code":"CN","type":"education","lineage":["https://openalex.org/I99065089"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhewei Qiu","raw_affiliation_strings":["School of Chemical Engineering and Technology, Tianjin University, Tianjin, China","School of Life Sciences, Tsinghua University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemical Engineering and Technology, Tianjin University, Tianjin, China","institution_ids":["https://openalex.org/I162868743"]},{"raw_affiliation_string":"School of Life Sciences, Tsinghua University, Beijing, China","institution_ids":["https://openalex.org/I99065089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038644575","display_name":"Yifan Tong","orcid":"https://orcid.org/0000-0001-9028-5756"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifan Tong","raw_affiliation_strings":["School of Chemical Engineering and Technology, Tianjin University, Tianjin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chemical Engineering and Technology, Tianjin University, Tianjin, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070125855","display_name":"Kai Song","orcid":"https://orcid.org/0000-0001-9195-6160"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Song","raw_affiliation_strings":["School of Chemical Engineering and Technology, Tianjin University, Tianjin, China"],"raw_orcid":"https://orcid.org/0000-0001-9195-6160","affiliations":[{"raw_affiliation_string":"School of Chemical Engineering and Technology, Tianjin University, Tianjin, China","institution_ids":["https://openalex.org/I162868743"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100696912"],"corresponding_institution_ids":["https://openalex.org/I162868743"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.6422,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.61561973,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"8","issue":null,"first_page":"89031","last_page":"89040"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10417","display_name":"Lung Cancer Treatments and Mutations","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/decipher","display_name":"DECIPHER","score":0.842056393623352},{"id":"https://openalex.org/keywords/adenocarcinoma","display_name":"Adenocarcinoma","score":0.5518614649772644},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5010364055633545},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4823698103427887},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4798504710197449},{"id":"https://openalex.org/keywords/signature","display_name":"Signature (topology)","score":0.4686379134654999},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.4478600025177002},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37482333183288574},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35497379302978516},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.24815678596496582},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2381788194179535},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23450475931167603},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.22289037704467773},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20794934034347534},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.14657187461853027},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0934695303440094}],"concepts":[{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.842056393623352},{"id":"https://openalex.org/C2781182431","wikidata":"https://www.wikidata.org/wiki/Q356033","display_name":"Adenocarcinoma","level":3,"score":0.5518614649772644},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5010364055633545},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4823698103427887},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4798504710197449},{"id":"https://openalex.org/C2779696439","wikidata":"https://www.wikidata.org/wiki/Q7512811","display_name":"Signature (topology)","level":2,"score":0.4686379134654999},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.4478600025177002},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37482333183288574},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35497379302978516},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.24815678596496582},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2381788194179535},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23450475931167603},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.22289037704467773},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20794934034347534},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.14657187461853027},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0934695303440094},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2993118","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2993118","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09088982.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:0e77d21af4ca4adf9a3bd469459796c2","is_oa":true,"landing_page_url":"https://doaj.org/article/0e77d21af4ca4adf9a3bd469459796c2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 89031-89040 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2993118","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2993118","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09088982.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8799999952316284,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G7636198416","display_name":null,"funder_award_id":"2018YFC0808600","funder_id":"https://openalex.org/F4320321540","funder_display_name":"Ministry of Science and Technology of the People's Republic of China"},{"id":"https://openalex.org/G8077554656","display_name":null,"funder_award_id":"2018YFC0808600","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3021662303.pdf","grobid_xml":"https://content.openalex.org/works/W3021662303.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1991680649","https://openalex.org/W1992649936","https://openalex.org/W1994225895","https://openalex.org/W2008255210","https://openalex.org/W2009720434","https://openalex.org/W2011941471","https://openalex.org/W2034269086","https://openalex.org/W2038181620","https://openalex.org/W2040178944","https://openalex.org/W2041594765","https://openalex.org/W2042386784","https://openalex.org/W2054035764","https://openalex.org/W2068881314","https://openalex.org/W2071392860","https://openalex.org/W2074512053","https://openalex.org/W2097238709","https://openalex.org/W2103017472","https://openalex.org/W2106787323","https://openalex.org/W2131876608","https://openalex.org/W2147835058","https://openalex.org/W2152061559","https://openalex.org/W2152176732","https://openalex.org/W2155736495","https://openalex.org/W2159675211","https://openalex.org/W2159987716","https://openalex.org/W2163798887","https://openalex.org/W2166749501","https://openalex.org/W2235523093","https://openalex.org/W2261193251","https://openalex.org/W2275877493","https://openalex.org/W2309028480","https://openalex.org/W2329284243","https://openalex.org/W2415808595","https://openalex.org/W2547187744","https://openalex.org/W2585470039","https://openalex.org/W2784142616","https://openalex.org/W2790695210","https://openalex.org/W2885851963","https://openalex.org/W2887754756","https://openalex.org/W2894582328","https://openalex.org/W2900569176","https://openalex.org/W2915168078","https://openalex.org/W2916893580","https://openalex.org/W4235895630","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2115350162","https://openalex.org/W2330145053","https://openalex.org/W4249875204","https://openalex.org/W4242620632","https://openalex.org/W3205440178","https://openalex.org/W2416520078","https://openalex.org/W2147420874","https://openalex.org/W2113606293","https://openalex.org/W2409656713","https://openalex.org/W4379618494"],"abstract_inverted_index":{"The":[0,125,166,212],"big":[1],"percentage":[2],"of":[3,15,23,43,117,156,168,205,209,226],"lung":[4,210],"adenocarcinomas":[5],"(LUAD)":[6],"arising":[7],"in":[8,195],"lifetime":[9],"nonsmokers":[10],"and":[11,70,119,130,137,158,162,170,180],"the":[12,21,63,98,139,154,183,196,206,223,230],"low":[13],"sensitivities":[14],"known":[16],"major":[17],"tobacco":[18,64,148],"biomarkers":[19],"urgent":[20],"identification":[22,247],"real":[24],"molecular":[25,78],"signatures":[26],"for":[27,160,222],"corresponding":[28],"personalized":[29],"treatment.":[30],"Moreover,":[31],"cancer":[32,243],"is":[33,84,102,201],"presumed":[34],"to":[35,57,71,86,92,104,135,239],"have":[36],"a":[37,49],"symptomatology":[38],"strongly":[39],"dependent":[40],"on":[41,48,97],"modules":[42],"functionally-related":[44],"genes":[45,60,144,152,190,215],"rather":[46],"than":[47],"unique":[50],"important":[51],"gene.":[52],"Our":[53],"aims,":[54],"therefore,":[55],"are":[56,133,145,182,191],"identify":[58],"signature":[59,151,189,214,246],"by":[61],"optimizing":[62],"exposure":[65],"pattern":[66],"(TEP)":[67],"classification":[68,94,141],"model":[69],"uncover":[72,175],"their":[73],"interaction":[74,172],"relationships":[75],"at":[76],"different":[77],"levels.":[79],"A":[80],"new":[81],"method,":[82,100],"TTZ,":[83],"proposed":[85],"extract":[87,105],"features":[88,106],"as":[89,147,203,218],"input":[90],"variables":[91],"TEP":[93,140],"model.":[95,142],"Based":[96],"Z-curve":[99],"TTZ":[101,231],"able":[103],"not":[107],"only":[108],"from":[109,114],"mutation":[110],"frequencies":[111],"but":[112],"also":[113],"sequencing":[115],"information":[116],"insertions":[118],"deletions.":[120],"Two":[121],"independent":[122],"LUAD":[123],"datasets,":[124],"Cancer":[126],"Genome":[127],"Atlas":[128],"(TCGA)":[129],"Broad":[131],"data,":[132,164],"downloaded":[134],"train":[136,161],"test":[138],"Thirty-four":[143],"identified":[146,213],"related":[149,244],"mutational":[150,245],"with":[153],"accuracies":[155],"93.55%":[157],"92.65%":[159],"validation":[163],"respectively.":[165],"inference":[167],"genetic":[169],"protein-protein":[171],"(PPI)":[173],"networks":[174],"that":[176],"LAMA1,":[177],"EGFR,":[178],"KRAS":[179],"TNN":[181],"most":[184],"connected":[185],"core":[186],"genes.":[187],"Six":[188],"proved":[192],"significantly":[193],"involved":[194],"cilium":[197],"damage":[198],"pathway,":[199],"which":[200],"considered":[202],"one":[204],"root":[207],"causes":[208],"cancer.":[211],"may":[216],"serve":[217],"potential":[219],"drug":[220],"targets":[221],"precision":[224],"medicine":[225],"LUAD.":[227],"Most":[228],"importantly,":[229],"feature":[232],"extracting":[233],"method":[234],"can":[235],"be":[236],"easily":[237],"extended":[238],"other":[240],"disease":[241],"or":[242],"issues.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
