{"id":"https://openalex.org/W3021030593","doi":"https://doi.org/10.1109/access.2020.2992468","title":"The Classification of Enzymes by Deep Learning","display_name":"The Classification of Enzymes by Deep Learning","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3021030593","doi":"https://doi.org/10.1109/access.2020.2992468","mag":"3021030593"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2992468","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2992468","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09086514.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09086514.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079522467","display_name":"Zhiyu Tao","orcid":"https://orcid.org/0000-0002-8419-2315"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyu Tao","raw_affiliation_strings":["Information and Computer Engineering College, Northeast Forestry University, Harbin, China"],"raw_orcid":"https://orcid.org/0000-0002-8419-2315","affiliations":[{"raw_affiliation_string":"Information and Computer Engineering College, Northeast Forestry University, Harbin, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000432316","display_name":"Benzhi Dong","orcid":"https://orcid.org/0000-0001-7885-0820"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Benzhi Dong","raw_affiliation_strings":["Information and Computer Engineering College, Northeast Forestry University, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Computer Engineering College, Northeast Forestry University, Harbin, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101611630","display_name":"Zhixia Teng","orcid":"https://orcid.org/0000-0002-6968-4354"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixia Teng","raw_affiliation_strings":["Information and Computer Engineering College, Northeast Forestry University, Harbin, China"],"raw_orcid":"https://orcid.org/0000-0002-6968-4354","affiliations":[{"raw_affiliation_string":"Information and Computer Engineering College, Northeast Forestry University, Harbin, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100599476","display_name":"Yuming Zhao","orcid":"https://orcid.org/0000-0001-7219-0999"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuming Zhao","raw_affiliation_strings":["Information and Computer Engineering College, Northeast Forestry University, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Computer Engineering College, Northeast Forestry University, Harbin, China","institution_ids":["https://openalex.org/I47689461"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I47689461"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":1.3019,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.79466789,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":null,"first_page":"89802","last_page":"89811"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.8294048309326172},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5469891428947449},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5131672024726868},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.4761103093624115},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4195634126663208},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.38436228036880493},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3510655164718628},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3034481406211853},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2760786712169647},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0869482159614563}],"concepts":[{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.8294048309326172},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5469891428947449},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5131672024726868},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.4761103093624115},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4195634126663208},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.38436228036880493},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3510655164718628},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3034481406211853},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2760786712169647},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0869482159614563}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2992468","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2992468","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09086514.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f0d7e8f83634468b85360493d0387fe0","is_oa":true,"landing_page_url":"https://doaj.org/article/f0d7e8f83634468b85360493d0387fe0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 89802-89811 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2992468","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2992468","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09086514.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1337973746","display_name":null,"funder_award_id":"61901103","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1457574289","display_name":"\u9762\u5411\u6beb\u7c73\u6ce2\u5927\u89c4\u6a21MIMO\u7cfb\u7edf\u7684\u9ad8\u80fd\u6548\u6df7\u5408\u9884\u7f16\u7801\u65b9\u6cd5\u4e0e\u7406\u8bba\u7814\u7a76","funder_award_id":"61971117","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3888423099","display_name":null,"funder_award_id":"LH2019F002","funder_id":"https://openalex.org/F4320323085","funder_display_name":"Natural Science Foundation of Heilongjiang Province"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323085","display_name":"Natural Science Foundation of Heilongjiang Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":107,"referenced_works":["https://openalex.org/W98466101","https://openalex.org/W1939390518","https://openalex.org/W2005786380","https://openalex.org/W2010688739","https://openalex.org/W2026666393","https://openalex.org/W2027514285","https://openalex.org/W2036198912","https://openalex.org/W2041840130","https://openalex.org/W2055903902","https://openalex.org/W2067364214","https://openalex.org/W2080638317","https://openalex.org/W2113077461","https://openalex.org/W2136648999","https://openalex.org/W2159855308","https://openalex.org/W2243092993","https://openalex.org/W2254740876","https://openalex.org/W2334475967","https://openalex.org/W2340907198","https://openalex.org/W2343191987","https://openalex.org/W2347112107","https://openalex.org/W2438439291","https://openalex.org/W2472502719","https://openalex.org/W2508405377","https://openalex.org/W2524367868","https://openalex.org/W2526285516","https://openalex.org/W2565482980","https://openalex.org/W2592644437","https://openalex.org/W2593867025","https://openalex.org/W2598525602","https://openalex.org/W2614935527","https://openalex.org/W2623542857","https://openalex.org/W2624963583","https://openalex.org/W2626127376","https://openalex.org/W2726111596","https://openalex.org/W2739455021","https://openalex.org/W2747811776","https://openalex.org/W2750245257","https://openalex.org/W2750547662","https://openalex.org/W2766300642","https://openalex.org/W2769032875","https://openalex.org/W2769952055","https://openalex.org/W2770001620","https://openalex.org/W2780936345","https://openalex.org/W2782438044","https://openalex.org/W2785449603","https://openalex.org/W2787229753","https://openalex.org/W2791289172","https://openalex.org/W2792533056","https://openalex.org/W2806146459","https://openalex.org/W2807018623","https://openalex.org/W2813360597","https://openalex.org/W2884152064","https://openalex.org/W2888784731","https://openalex.org/W2888906255","https://openalex.org/W2891893703","https://openalex.org/W2892210937","https://openalex.org/W2895484279","https://openalex.org/W2896365426","https://openalex.org/W2896636431","https://openalex.org/W2898454434","https://openalex.org/W2899075300","https://openalex.org/W2899288360","https://openalex.org/W2900134604","https://openalex.org/W2900490197","https://openalex.org/W2900694973","https://openalex.org/W2900891475","https://openalex.org/W2904828342","https://openalex.org/W2908663744","https://openalex.org/W2910249797","https://openalex.org/W2910596642","https://openalex.org/W2913457010","https://openalex.org/W2914174212","https://openalex.org/W2914272550","https://openalex.org/W2923490814","https://openalex.org/W2936144882","https://openalex.org/W2945303443","https://openalex.org/W2946146152","https://openalex.org/W2951793362","https://openalex.org/W2953169496","https://openalex.org/W2953321375","https://openalex.org/W2966349991","https://openalex.org/W2966917770","https://openalex.org/W2968914808","https://openalex.org/W2970416468","https://openalex.org/W2971551439","https://openalex.org/W2972223935","https://openalex.org/W2977235223","https://openalex.org/W2979860957","https://openalex.org/W2980870427","https://openalex.org/W2981093945","https://openalex.org/W2981438385","https://openalex.org/W2982425557","https://openalex.org/W2982608875","https://openalex.org/W2985650650","https://openalex.org/W2985780193","https://openalex.org/W2985856177","https://openalex.org/W2987928072","https://openalex.org/W2989977616","https://openalex.org/W2994725160","https://openalex.org/W2997680655","https://openalex.org/W2999310752","https://openalex.org/W3003008175","https://openalex.org/W3004758826","https://openalex.org/W3012664382","https://openalex.org/W4205544245","https://openalex.org/W4255502791","https://openalex.org/W6769216249"],"related_works":["https://openalex.org/W2368454205","https://openalex.org/W574537754","https://openalex.org/W4242974861","https://openalex.org/W1850986032","https://openalex.org/W4205713722","https://openalex.org/W4384079555","https://openalex.org/W2044368122","https://openalex.org/W2080203695","https://openalex.org/W2038640328","https://openalex.org/W2370467235"],"abstract_inverted_index":{"Enzymes,":[0],"as":[1],"a":[2,69,95,152,176],"group":[3],"of":[4,25,85,91,109,117,122,157,169,178,185],"crucial":[5],"biocatalysts":[6],"produced":[7],"by":[8,29,171],"living":[9],"cells,":[10],"enable":[11],"the":[12,23,26,31,72,89,105,115,120,166,183],"chemical":[13],"reactions":[14,27],"in":[15,44,77,182,188],"organisms":[16],"to":[17,22,102,133,137,146],"be":[18],"more":[19,160],"efficient.":[20],"According":[21],"properties":[24,84],"catalyzed":[28],"enzymes,":[30],"Enzyme":[32],"Commission":[33],"(EC)":[34],"number":[35,121,168],"system":[36],"divided":[37],"enzymes":[38,81,123,170],"into":[39],"6":[40],"primary":[41],"main":[42],"classes":[43,93,149],"1961:":[45],"oxidoreductases":[46],"(EC1),":[47],"transferases":[48],"(EC2),":[49],"hydrolases":[50],"(EC3),":[51],"lyases":[52],"(EC4),":[53],"isomerases":[54],"(EC5),":[55],"and":[56,88,107,162],"ligases":[57],"(EC6).":[58],"These":[59],"six":[60],"categories":[61],"did":[62],"not":[63],"change":[64],"for":[65,164],"many":[66],"years":[67],"until":[68],"new":[70],"class,":[71],"translocases":[73],"(EC7),":[74],"was":[75],"added":[76],"August":[78],"2018.":[79],"Different":[80],"have":[82],"different":[83],"catalytic":[86],"reaction,":[87],"prediction":[90,184],"enzyme":[92,110,139,148,186],"is":[94,128,131],"very":[96],"important":[97],"research":[98,179],"topic,":[99],"allowing":[100],"us":[101],"further":[103],"study":[104],"structure":[106],"function":[108,125],"molecules":[111],"when":[112],"we":[113,174],"know":[114],"category":[116],"enzyme.":[118],"Because":[119],"whose":[124],"remains":[126],"unknown":[127],"enormous,":[129],"it":[130],"time-consuming":[132],"use":[134],"biological":[135],"experiments":[136],"determine":[138],"characteristics.":[140],"Thus,":[141],"devising":[142],"various":[143],"computational":[144],"models":[145],"predict":[147],"has":[150],"become":[151],"feasible":[153],"scheme.":[154],"In":[155],"hope":[156],"giving":[158],"researchers":[159],"inspiration":[161],"ideas":[163],"predicting":[165],"EC":[167],"machine":[172],"learning,":[173],"summarize":[175],"variety":[177],"methods":[180],"used":[181],"families":[187],"this":[189],"research.":[190]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
