{"id":"https://openalex.org/W3022661224","doi":"https://doi.org/10.1109/access.2020.2991477","title":"iRNA-m5C_NB: A Novel Predictor to Identify RNA 5-Methylcytosine Sites Based on the Naive Bayes Classifier","display_name":"iRNA-m5C_NB: A Novel Predictor to Identify RNA 5-Methylcytosine Sites Based on the Naive Bayes Classifier","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3022661224","doi":"https://doi.org/10.1109/access.2020.2991477","mag":"3022661224"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2991477","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2991477","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09082630.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09082630.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045511627","display_name":"Lijun Dou","orcid":"https://orcid.org/0000-0003-3617-3416"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I182722699","display_name":"Shenzhen Polytechnic University","ror":"https://ror.org/00d2w9g53","country_code":"CN","type":"education","lineage":["https://openalex.org/I182722699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijun Dou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China","School of Automotive and Transportation Engineering, Shenzhen Polytechnic, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0003-3617-3416","affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"School of Automotive and Transportation Engineering, Shenzhen Polytechnic, Shenzhen, China","institution_ids":["https://openalex.org/I182722699"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369483","display_name":"Xiao-Ling Li","orcid":"https://orcid.org/0000-0001-8907-7394"},"institutions":[{"id":"https://openalex.org/I4210135642","display_name":"Heilongjiang Academy of Land Reclamation Sciences","ror":"https://ror.org/03sv0ep05","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210135642"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoling Li","raw_affiliation_strings":["Department of Oncology, Heilongjiang Province Land Reclamation Headquarters General Hospital, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Oncology, Heilongjiang Province Land Reclamation Headquarters General Hospital, Harbin, China","institution_ids":["https://openalex.org/I4210135642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062628676","display_name":"Hui Ding","orcid":"https://orcid.org/0000-0002-9607-9571"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Ding","raw_affiliation_strings":["Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":"https://orcid.org/0000-0002-9607-9571","affiliations":[{"raw_affiliation_string":"Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100622723","display_name":"Lei Xu","orcid":"https://orcid.org/0000-0002-6440-6881"},"institutions":[{"id":"https://openalex.org/I182722699","display_name":"Shenzhen Polytechnic University","ror":"https://ror.org/00d2w9g53","country_code":"CN","type":"education","lineage":["https://openalex.org/I182722699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Xu","raw_affiliation_strings":["School of Electronic and Communication Engineering, Shenzhen Polytechnic, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic and Communication Engineering, Shenzhen Polytechnic, Shenzhen, China","institution_ids":["https://openalex.org/I182722699"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101627128","display_name":"Huaikun Xiang","orcid":"https://orcid.org/0000-0003-1187-892X"},"institutions":[{"id":"https://openalex.org/I182722699","display_name":"Shenzhen Polytechnic University","ror":"https://ror.org/00d2w9g53","country_code":"CN","type":"education","lineage":["https://openalex.org/I182722699"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huaikun Xiang","raw_affiliation_strings":["School of Automotive and Transportation Engineering, Shenzhen Polytechnic, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Automotive and Transportation Engineering, Shenzhen Polytechnic, Shenzhen, China","institution_ids":["https://openalex.org/I182722699"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":1.0578,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.75485668,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"8","issue":null,"first_page":"84906","last_page":"84917"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/naive-bayes-classifier","display_name":"Naive Bayes classifier","score":0.6400900483131409},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5949921011924744},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3953206539154053},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3710469603538513},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3304005265235901},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3268676996231079},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15265586972236633},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.12584936618804932}],"concepts":[{"id":"https://openalex.org/C52001869","wikidata":"https://www.wikidata.org/wiki/Q812530","display_name":"Naive Bayes classifier","level":3,"score":0.6400900483131409},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5949921011924744},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3953206539154053},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3710469603538513},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3304005265235901},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3268676996231079},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15265586972236633},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.12584936618804932}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2991477","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2991477","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09082630.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:0a10444cbf6849cfbcff5c12db0c9edb","is_oa":true,"landing_page_url":"https://doaj.org/article/0a10444cbf6849cfbcff5c12db0c9edb","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 84906-84917 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2991477","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2991477","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09082630.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5169269796","display_name":null,"funder_award_id":"61902259","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3022661224.pdf","grobid_xml":"https://content.openalex.org/works/W3022661224.grobid-xml"},"referenced_works_count":131,"referenced_works":["https://openalex.org/W7721663","https://openalex.org/W1935366897","https://openalex.org/W1947267113","https://openalex.org/W1976526581","https://openalex.org/W1976978745","https://openalex.org/W1979273476","https://openalex.org/W1988790447","https://openalex.org/W1993220166","https://openalex.org/W2005311687","https://openalex.org/W2005786380","https://openalex.org/W2010688739","https://openalex.org/W2022268135","https://openalex.org/W2027514285","https://openalex.org/W2048356293","https://openalex.org/W2055735408","https://openalex.org/W2058767191","https://openalex.org/W2062692445","https://openalex.org/W2067022150","https://openalex.org/W2067364214","https://openalex.org/W2081943791","https://openalex.org/W2085398950","https://openalex.org/W2101234009","https://openalex.org/W2107686700","https://openalex.org/W2124800414","https://openalex.org/W2143801120","https://openalex.org/W2148143831","https://openalex.org/W2159855308","https://openalex.org/W2165040571","https://openalex.org/W2167397429","https://openalex.org/W2170747616","https://openalex.org/W2171557832","https://openalex.org/W2427122612","https://openalex.org/W2438439291","https://openalex.org/W2461096072","https://openalex.org/W2470414691","https://openalex.org/W2490420619","https://openalex.org/W2513334320","https://openalex.org/W2516916168","https://openalex.org/W2524367868","https://openalex.org/W2526285516","https://openalex.org/W2591077138","https://openalex.org/W2592644437","https://openalex.org/W2604822050","https://openalex.org/W2606518593","https://openalex.org/W2607378088","https://openalex.org/W2608035254","https://openalex.org/W2614935527","https://openalex.org/W2623542857","https://openalex.org/W2741867328","https://openalex.org/W2750547662","https://openalex.org/W2768833223","https://openalex.org/W2769865684","https://openalex.org/W2776616144","https://openalex.org/W2780936345","https://openalex.org/W2782565892","https://openalex.org/W2793168264","https://openalex.org/W2794800511","https://openalex.org/W2798106464","https://openalex.org/W2799200068","https://openalex.org/W2800245053","https://openalex.org/W2801398392","https://openalex.org/W2804672687","https://openalex.org/W2806146459","https://openalex.org/W2806565274","https://openalex.org/W2808487499","https://openalex.org/W2810968367","https://openalex.org/W2883534252","https://openalex.org/W2884581375","https://openalex.org/W2886568032","https://openalex.org/W2886900083","https://openalex.org/W2889929401","https://openalex.org/W2891290193","https://openalex.org/W2891893703","https://openalex.org/W2896605526","https://openalex.org/W2897050165","https://openalex.org/W2899288360","https://openalex.org/W2900134604","https://openalex.org/W2900694973","https://openalex.org/W2901890703","https://openalex.org/W2905321002","https://openalex.org/W2905629607","https://openalex.org/W2909387555","https://openalex.org/W2909409778","https://openalex.org/W2910249797","https://openalex.org/W2911617196","https://openalex.org/W2911756720","https://openalex.org/W2911964244","https://openalex.org/W2915489297","https://openalex.org/W2919339992","https://openalex.org/W2921372942","https://openalex.org/W2928048063","https://openalex.org/W2945940051","https://openalex.org/W2947612926","https://openalex.org/W2947856732","https://openalex.org/W2961565435","https://openalex.org/W2964676347","https://openalex.org/W2964792397","https://openalex.org/W2966917770","https://openalex.org/W2967387109","https://openalex.org/W2967960129","https://openalex.org/W2969865287","https://openalex.org/W2969993699","https://openalex.org/W2971644666","https://openalex.org/W2972223935","https://openalex.org/W2977493246","https://openalex.org/W2979937512","https://openalex.org/W2980870427","https://openalex.org/W2980916803","https://openalex.org/W2987928072","https://openalex.org/W2991266812","https://openalex.org/W2993199494","https://openalex.org/W2997784914","https://openalex.org/W2997945489","https://openalex.org/W2998017102","https://openalex.org/W2998220730","https://openalex.org/W2998532284","https://openalex.org/W2998899716","https://openalex.org/W3004263072","https://openalex.org/W3004352962","https://openalex.org/W3004758826","https://openalex.org/W3012664382","https://openalex.org/W3147322592","https://openalex.org/W4205544245","https://openalex.org/W4239510810","https://openalex.org/W6600307240","https://openalex.org/W6629718364","https://openalex.org/W6675354045","https://openalex.org/W6754904495","https://openalex.org/W6769216249","https://openalex.org/W6769459572","https://openalex.org/W6770414484"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W1989494794","https://openalex.org/W2122031327","https://openalex.org/W1184238669","https://openalex.org/W3107602296"],"abstract_inverted_index":{"As":[0],"one":[1],"of":[2,17,45,109,149,163,167],"the":[3,103,131,134,138,153,157,171,177,181,197,205],"widespread":[4],"RNA":[5,46],"post-transcriptional":[6],"modifications":[7],"(PTCMs),":[8],"5-Methylcytosine":[9],"(m5C)":[10],"plays":[11],"vital":[12],"roles":[13],"in":[14,74],"better":[15],"understanding":[16],"basic":[18],"biological":[19],"mechanisms":[20],"and":[21,37,55,127,165,180,188,192,219],"major":[22],"disease":[23],"treatments.":[24],"In":[25,82],"experiments,":[26],"traditional":[27],"high-throughput":[28],"approaches":[29],"to":[30,52,70,145,215,222],"find":[31],"m5C":[32,54,72,173,224],"sites":[33,57,73],"are":[34,100,184],"usually":[35],"expensive":[36],"laborious.":[38],"Additionally,":[39],"facing":[40],"with":[41,147,196],"a":[42,65],"large":[43],"number":[44],"sequences,":[47],"developing":[48],"accurate":[49],"computational":[50],"methods":[51],"distinguish":[53],"non-m5C":[56],"is":[58,88,143,170],"an":[59,217],"efficient":[60,92,218],"solution.":[61],"Here":[62],"we":[63],"introduced":[64],"novel":[66],"predictor,":[67],"called":[68],"iRNA-m5C_NB,":[69],"identify":[71,223],"Home":[75],"sapiens":[76],"using":[77,91,176],"Naive":[78],"Bayes":[79,116],"(NB)":[80],"algorithm.":[81],"this":[83],"method,":[84],"unbalanced":[85,139,178],"dataset":[86,141,155],"Met935":[87,142],"firstly":[89],"analyzed":[90],"hybrid-sampling":[93],"strategy":[94],"SMOTEEEN.":[95],"Then":[96],"top":[97],"57":[98],"features":[99],"selected":[101],"by":[102,186],"ANOVA":[104],"F-value":[105],"from":[106],"four":[107],"kinds":[108],"well-performance":[110],"feature":[111],"extraction":[112],"techniques,":[113],"including":[114],"Bi-profile":[115],"(BPB),":[117],"enhanced":[118],"Nucleic":[119],"Acid":[120],"Composition":[121],"(ENAC),":[122],"electron-ion":[123],"interaction":[124],"pseudopotentials":[125],"(EIIP)":[126],"mMGap_1.":[128],"Based":[129],"on":[130],"jackknife":[132,191],"test,":[133],"evaluated":[135],"recall":[136,162,182],"for":[137,152,190],"training":[140],"up":[144],"82.81%":[146],"MCC":[148,166],"0.63.":[150],"And":[151],"independent":[154,193],"Test1157,":[156],"predictor":[158,174,207],"still":[159],"shows":[160],"high":[161],"70.06%":[164],"0.34.":[168],"It":[169],"first":[172],"constructed":[175],"dataset,":[179],"scores":[183],"increased":[185],"19.82%":[187],"59.23%":[189],"tests":[194],"compared":[195],"latest":[198],"tool":[199],"RNAm5CPred,":[200],"respectively.":[201],"We":[202],"demonstrate":[203],"that":[204],"proposed":[206],"iRNA-m5C_NB":[208],"outperforms":[209],"other":[210],"state-of-art":[211],"models,":[212],"which":[213],"hopes":[214],"be":[216],"reliable":[220],"method":[221],"sites.":[225]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2020-05-13T00:00:00"}
