{"id":"https://openalex.org/W3015586533","doi":"https://doi.org/10.1109/access.2020.2987071","title":"Disease-Pathway Association Prediction Based on Random Walks With Restart and PageRank","display_name":"Disease-Pathway Association Prediction Based on Random Walks With Restart and PageRank","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3015586533","doi":"https://doi.org/10.1109/access.2020.2987071","mag":"3015586533"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2987071","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2987071","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09063531.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09063531.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072305228","display_name":"Ali Ghulam","orcid":"https://orcid.org/0000-0001-5166-2213"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ali Ghulam","raw_affiliation_strings":["School of Computer Science, Shaanxi Normal University, Xi\u2019an, China","School of Computer Science, Shaanxi Normal University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, Xi\u2019an, China","institution_ids":["https://openalex.org/I88830068"]},{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, Xi'an, China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058768577","display_name":"Xiujuan Lei","orcid":"https://orcid.org/0000-0002-9901-1732"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiujuan Lei","raw_affiliation_strings":["School of Computer Science, Shaanxi Normal University, Xi\u2019an, China","School of Computer Science, Shaanxi Normal University, Xi'an, China"],"raw_orcid":"https://orcid.org/0000-0002-9901-1732","affiliations":[{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, Xi\u2019an, China","institution_ids":["https://openalex.org/I88830068"]},{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, Xi'an, China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102741318","display_name":"Min Guo","orcid":"https://orcid.org/0000-0001-6453-7892"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Guo","raw_affiliation_strings":["School of Computer Science, Shaanxi Normal University, Xi\u2019an, China","School of Computer Science, Shaanxi Normal University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, Xi\u2019an, China","institution_ids":["https://openalex.org/I88830068"]},{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, Xi'an, China","institution_ids":["https://openalex.org/I88830068"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064654633","display_name":"Chen Bian","orcid":"https://orcid.org/0000-0001-7990-5125"},"institutions":[{"id":"https://openalex.org/I88830068","display_name":"Shaanxi Normal University","ror":"https://ror.org/0170z8493","country_code":"CN","type":"education","lineage":["https://openalex.org/I88830068"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Bian","raw_affiliation_strings":["School of Computer Science, Shaanxi Normal University, Xi\u2019an, China","School of Computer Science, Shaanxi Normal University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, Xi\u2019an, China","institution_ids":["https://openalex.org/I88830068"]},{"raw_affiliation_string":"School of Computer Science, Shaanxi Normal University, Xi'an, China","institution_ids":["https://openalex.org/I88830068"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5072305228"],"corresponding_institution_ids":["https://openalex.org/I88830068"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":1.0837,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.75971766,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"8","issue":null,"first_page":"72021","last_page":"72038"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9708999991416931,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6747745871543884},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6610915660858154},{"id":"https://openalex.org/keywords/pagerank","display_name":"PageRank","score":0.5815758109092712},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5406458377838135},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.522788941860199},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4914129972457886},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.4812052547931671},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.44098547101020813},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4364731013774872},{"id":"https://openalex.org/keywords/genetic-association","display_name":"Genetic association","score":0.4193142354488373},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3609427511692047},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32499146461486816},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3192046880722046},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28589871525764465},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.21975386142730713},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.20186716318130493},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16553738713264465},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1515377163887024},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.12488371133804321},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.10581457614898682},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.10327038168907166}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6747745871543884},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6610915660858154},{"id":"https://openalex.org/C2779172887","wikidata":"https://www.wikidata.org/wiki/Q184316","display_name":"PageRank","level":2,"score":0.5815758109092712},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5406458377838135},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.522788941860199},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4914129972457886},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.4812052547931671},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.44098547101020813},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4364731013774872},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.4193142354488373},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3609427511692047},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32499146461486816},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3192046880722046},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28589871525764465},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.21975386142730713},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.20186716318130493},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16553738713264465},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1515377163887024},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.12488371133804321},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.10581457614898682},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.10327038168907166},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2987071","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2987071","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09063531.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:3c70d4552a534eca8e8fc93cdb069174","is_oa":true,"landing_page_url":"https://doaj.org/article/3c70d4552a534eca8e8fc93cdb069174","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 72021-72038 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2987071","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2987071","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09063531.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G450443699","display_name":null,"funder_award_id":"61972451","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7417567555","display_name":null,"funder_award_id":"61672334","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7717298466","display_name":null,"funder_award_id":"GK201901010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8279569169","display_name":null,"funder_award_id":"61902230","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8513270824","display_name":null,"funder_award_id":"61672334","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G8535955237","display_name":null,"funder_award_id":"GK201901010","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3015586533.pdf","grobid_xml":"https://content.openalex.org/works/W3015586533.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1908169018","https://openalex.org/W1923384484","https://openalex.org/W1985849948","https://openalex.org/W1992442866","https://openalex.org/W1997578267","https://openalex.org/W2018680580","https://openalex.org/W2044340941","https://openalex.org/W2051616601","https://openalex.org/W2055157797","https://openalex.org/W2058293922","https://openalex.org/W2066669827","https://openalex.org/W2090247362","https://openalex.org/W2100582962","https://openalex.org/W2102839669","https://openalex.org/W2110684048","https://openalex.org/W2115095764","https://openalex.org/W2119220491","https://openalex.org/W2119412782","https://openalex.org/W2124204060","https://openalex.org/W2126522547","https://openalex.org/W2136178650","https://openalex.org/W2136640051","https://openalex.org/W2158418435","https://openalex.org/W2168301815","https://openalex.org/W2224812643","https://openalex.org/W2230183270","https://openalex.org/W2259538443","https://openalex.org/W2462108616","https://openalex.org/W2473876819","https://openalex.org/W2576112076","https://openalex.org/W2583448606","https://openalex.org/W2600529259","https://openalex.org/W2743657615","https://openalex.org/W2752131265","https://openalex.org/W2769032875","https://openalex.org/W2792962096","https://openalex.org/W2806774580","https://openalex.org/W2809363952","https://openalex.org/W2890691674","https://openalex.org/W2896172590","https://openalex.org/W2903104110","https://openalex.org/W2964198126","https://openalex.org/W3007819083","https://openalex.org/W6718962110","https://openalex.org/W6731933549","https://openalex.org/W6749722087","https://openalex.org/W6929305571"],"related_works":["https://openalex.org/W2154222238","https://openalex.org/W2106626222","https://openalex.org/W2980866815","https://openalex.org/W1562405179","https://openalex.org/W2125493559","https://openalex.org/W1544909909","https://openalex.org/W4321488442","https://openalex.org/W1992077244","https://openalex.org/W2892165056","https://openalex.org/W2098964748"],"abstract_inverted_index":{"The":[0,16,35,65,82,160,285,294],"study":[1,54,117],"of":[2,12,18,27,32,37,47,62,140,144,152,215,223,239,261,302],"disease-pathway":[3,63,84,96,108,216,224,263,286,292,328],"association":[4,17,85],"in":[5,24,49],"human":[6,33],"diseases":[7,19,279],"is":[8,69,87],"a":[9,56,88,115,134,153,177,271,305],"perennial":[10],"focus":[11],"the":[13,25,28,60,99,105,138,150,157,169,185,197,213,220,228,236,250,258,275,343],"biomedical":[14],"field.":[15],"and":[20,80,111,123,146,184,189,201,280,304,327,336],"pathways":[21],"can":[22,93,101],"help":[23,102],"discovery":[26],"mechanisms":[29],"or":[30],"relationships":[31,122,329],"diseases.":[34],"accuracy":[36],"disease":[38,120,154,188,190,202],"identification":[39],"has":[40,315],"been":[41],"less":[42],"than":[43,319],"satisfactory":[44],"despite":[45],"decades":[46],"research":[48],"this":[50,53],"area.":[51],"Therefore,":[52],"proposes":[55],"computational":[57,67,90],"model":[58,68,86,91,100],"for":[59,346],"prediction":[61,259],"associations.":[64,97,217,293],"proposed":[66,321,342],"based":[70,164,234],"on":[71,76,137,165,211,235],"Random":[72],"Walk":[73],"with":[74,205,274,333],"Restart":[75],"heterogeneous":[77],"network":[78,136,161,181,222],"(RWRH)":[79],"PageRank.":[81,207],"RWRH":[83],"novel":[89],"that":[92,312],"predict":[94],"potential":[95],"Furthermore,":[98],"pathologists":[103],"understand":[104],"correlations":[106,128],"among":[107],"associations,":[109],"treatments,":[110],"reactions.":[112],"We":[113,132,194,218,323,340],"performed":[114],"pathway-based":[116],"to":[118,124,148,226,256],"expand":[119],"variation":[121],"find":[125],"new":[126],"molecular":[127],"between":[129,171,187],"genetic":[130],"mutations.":[131],"constructed":[133,158],"biological":[135,230],"basis":[139],"shared":[141],"gene":[142],"interactions":[143],"disease-pathways":[145],"attempted":[147],"investigate":[149],"pathogenesis":[151],"by":[155,248,330],"analyzing":[156],"network.":[159],"construction":[162],"was":[163,174,182,192,233],"two":[166],"parts.":[167],"First,":[168],"similarity":[170,180,191,238],"pathway-pathway":[172],"networks":[173],"calculated.":[175,193],"Second,":[176],"disease-disease":[178],"(DD)":[179],"constructed,":[183],"correlation":[186],"also":[195],"investigated":[196],"pathway":[198],"seed":[199,203],"node":[200,204],"high":[206],"Moreover,":[208],"we":[209,269],"focused":[210],"mining":[212],"complexity":[214],"used":[219,255],"bipartite":[221],"associations":[225,335],"combine":[227],"obtained":[229,247],"information,":[231],"which":[232,245],"pair":[237],"sequence":[240],"expression":[241],"weights.":[242],"These":[243,309],"weights,":[244],"were":[246,254],"using":[249],"multilayer":[251],"resource-allocation":[252],"algorithm,":[253],"calculate":[257],"scores":[260],"each":[262],"pair.":[264],"Here,":[265],"through":[266,337],"leave-one-out":[267],"cross-validation,":[268],"examined":[270],"$210\\times1855$":[272],"matrix,":[273],"210":[276],"rows":[277],"representing":[278],"1855":[281],"columns":[282],"indicating":[283],"pathways.":[284],"adjacency":[287],"matrix":[288],"contained":[289],"13,838":[290],"known":[291,334],"best":[295],"predictive":[296],"results":[297,310],"achieved":[298],"an":[299],"area-under-the-curve":[300],"value":[301],"0.8218":[303],"two-class":[306],"precision-recall":[307],"curve.":[308],"indicate":[311],"our":[313,347],"method":[314],"higher":[316],"scientific":[317],"performance":[318],"previously":[320],"methods.":[322],"predicted":[324],"pathogen,":[325],"DD,":[326],"comparing":[331],"them":[332],"publication":[338],"search.":[339],"then":[341],"possible":[344],"reasons":[345],"predictions.":[348]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
