{"id":"https://openalex.org/W3015541473","doi":"https://doi.org/10.1109/access.2020.2985737","title":"The Frequencies of Oppositely Charged, Uncharged Polar, and \u03b2-Branched Amino Acids Determine Proteins\u2019 Thermostability","display_name":"The Frequencies of Oppositely Charged, Uncharged Polar, and \u03b2-Branched Amino Acids Determine Proteins\u2019 Thermostability","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3015541473","doi":"https://doi.org/10.1109/access.2020.2985737","mag":"3015541473"},"language":"en","primary_location":{"id":"doi:10.1109/access.2020.2985737","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2985737","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09057404.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09057404.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082428256","display_name":"Shanwen Sun","orcid":"https://orcid.org/0000-0003-4358-8636"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shanwen Sun","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":"https://orcid.org/0000-0003-4358-8636","affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016729401","display_name":"Chunyan Ao","orcid":"https://orcid.org/0000-0002-3008-6357"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunyan Ao","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101977346","display_name":"Donghua Wang","orcid":"https://orcid.org/0000-0002-3450-8000"},"institutions":[{"id":"https://openalex.org/I4210135642","display_name":"Heilongjiang Academy of Land Reclamation Sciences","ror":"https://ror.org/03sv0ep05","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210135642"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Donghua Wang","raw_affiliation_strings":["Department of General Surgery, Heilongjiang Province Land Reclamation Headquarters General Hospital, Harbin, China"],"raw_orcid":"https://orcid.org/0000-0002-3450-8000","affiliations":[{"raw_affiliation_string":"Department of General Surgery, Heilongjiang Province Land Reclamation Headquarters General Hospital, Harbin, China","institution_ids":["https://openalex.org/I4210135642"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000432316","display_name":"Benzhi Dong","orcid":"https://orcid.org/0000-0001-7885-0820"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Benzhi Dong","raw_affiliation_strings":["Information and Computer Engineering College, Northeast Forestry University, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Computer Engineering College, Northeast Forestry University, Harbin, China","institution_ids":["https://openalex.org/I47689461"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5082428256"],"corresponding_institution_ids":["https://openalex.org/I150229711"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.0834,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.43316549,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"8","issue":null,"first_page":"66839","last_page":"66845"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/thermostability","display_name":"Thermostability","score":0.9965246319770813},{"id":"https://openalex.org/keywords/thermolabile","display_name":"Thermolabile","score":0.8905041813850403},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.7638310790061951},{"id":"https://openalex.org/keywords/thermophile","display_name":"Thermophile","score":0.600684642791748},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.5583420395851135},{"id":"https://openalex.org/keywords/protein-engineering","display_name":"Protein engineering","score":0.5173699259757996},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.4195351004600525},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.33806729316711426}],"concepts":[{"id":"https://openalex.org/C2781216036","wikidata":"https://www.wikidata.org/wiki/Q902494","display_name":"Thermostability","level":3,"score":0.9965246319770813},{"id":"https://openalex.org/C2779155592","wikidata":"https://www.wikidata.org/wiki/Q2403956","display_name":"Thermolabile","level":3,"score":0.8905041813850403},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.7638310790061951},{"id":"https://openalex.org/C27911776","wikidata":"https://www.wikidata.org/wiki/Q834023","display_name":"Thermophile","level":3,"score":0.600684642791748},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5583420395851135},{"id":"https://openalex.org/C147816474","wikidata":"https://www.wikidata.org/wiki/Q169525","display_name":"Protein engineering","level":3,"score":0.5173699259757996},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.4195351004600525},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.33806729316711426}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2020.2985737","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2985737","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09057404.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:7190ff71b0c64a7bbc4df9804ac56d89","is_oa":true,"landing_page_url":"https://doaj.org/article/7190ff71b0c64a7bbc4df9804ac56d89","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 8, Pp 66839-66845 (2020)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2020.2985737","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2020.2985737","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/8948470/09057404.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.5199999809265137},{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G1587116901","display_name":null,"funder_award_id":"61771331","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1674180717","display_name":null,"funder_award_id":"61922020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3788934904","display_name":null,"funder_award_id":"2018YFC0910405","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4071971942","display_name":null,"funder_award_id":"91935302","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3015541473.pdf","grobid_xml":"https://content.openalex.org/works/W3015541473.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W235161377","https://openalex.org/W876310579","https://openalex.org/W1579831267","https://openalex.org/W1863266496","https://openalex.org/W1966387988","https://openalex.org/W1974572084","https://openalex.org/W1976981353","https://openalex.org/W1988875950","https://openalex.org/W1990406007","https://openalex.org/W1995180700","https://openalex.org/W2002420618","https://openalex.org/W2005407799","https://openalex.org/W2008846230","https://openalex.org/W2018796001","https://openalex.org/W2027301304","https://openalex.org/W2027304997","https://openalex.org/W2031328428","https://openalex.org/W2041809990","https://openalex.org/W2045608551","https://openalex.org/W2047444359","https://openalex.org/W2055071864","https://openalex.org/W2070184351","https://openalex.org/W2074361427","https://openalex.org/W2076938281","https://openalex.org/W2081893178","https://openalex.org/W2083811115","https://openalex.org/W2091714383","https://openalex.org/W2092485312","https://openalex.org/W2101468567","https://openalex.org/W2102626860","https://openalex.org/W2110319746","https://openalex.org/W2122486464","https://openalex.org/W2123505008","https://openalex.org/W2140250059","https://openalex.org/W2153195964","https://openalex.org/W2154665416","https://openalex.org/W2159272215","https://openalex.org/W2163407325","https://openalex.org/W2438439291","https://openalex.org/W2441906765","https://openalex.org/W2553132141","https://openalex.org/W2557117995","https://openalex.org/W2785449603","https://openalex.org/W2809086759","https://openalex.org/W2891888787","https://openalex.org/W2891893703","https://openalex.org/W2905281057","https://openalex.org/W2947612926","https://openalex.org/W2969993699","https://openalex.org/W2971551439","https://openalex.org/W4250614649","https://openalex.org/W4399271987","https://openalex.org/W4399538195","https://openalex.org/W6651272081","https://openalex.org/W6668076700","https://openalex.org/W6682957139","https://openalex.org/W6757037389","https://openalex.org/W6870084398","https://openalex.org/W7073600146"],"related_works":["https://openalex.org/W2413296661","https://openalex.org/W1987834288","https://openalex.org/W109238282","https://openalex.org/W2128061012","https://openalex.org/W2737170522","https://openalex.org/W2382137666","https://openalex.org/W2068147017","https://openalex.org/W2073544937","https://openalex.org/W2955670938","https://openalex.org/W111524047"],"abstract_inverted_index":{"Enhancing":[0],"proteins'":[1,19,157],"thermostability":[2,33,158],"is":[3,159],"an":[4,196],"important":[5,106],"aspect":[6],"of":[7,34,42,86,119,141,188],"enzyme":[8],"engineering.":[9],"Many":[10],"studies":[11],"have":[12],"investigated":[13],"the":[14,18,28,31,39,43,84,117,139,171,180],"properties":[15],"that":[16,83,101,116,156,191],"determine":[17],"thermostability.":[20,151],"However,":[21],"no":[22],"consensus":[23],"has":[24],"emerged.":[25],"To":[26],"understand":[27],"mechanisms":[29],"underlying":[30],"high":[32,111,186],"thermophilic":[35,52,98,136],"proteins,":[36,99],"we":[37,114],"evaluated":[38],"relative":[40],"importance":[41],"amino":[44,89,122,144],"acid":[45],"frequencies":[46,85,118,140],"in":[47,97,135],"protein":[48,108,164],"sequences":[49],"for":[50,107,201],"discriminating":[51],"and":[53,68,77,93,198],"non-thermophilic":[54],"proteins":[55],"based":[56,177],"on":[57,178],"machine":[58],"learning":[59],"algorithms":[60],"together":[61],"with":[62,130,149],"a":[63,69,162,185],"three-step":[64],"feature":[65],"selection":[66],"procedure":[67],"principal":[70],"component":[71],"(PC)":[72],"analysis":[73],"to":[74,147],"remove":[75],"noisy":[76],"redundant":[78],"information.":[79],"Our":[80],"results":[81,154],"showed":[82],"oppositely":[87],"charged":[88],"acids,":[90,123],"i.e.,":[91],"Lys":[92],"Glu,":[94],"were":[95,133,167],"higher":[96],"suggesting":[100,190],"electrostatic":[102],"interactions":[103],"are":[104,125],"fundamentally":[105],"stabilization":[109],"at":[110],"temperatures.":[112],"Further,":[113],"found":[115],"uncharged":[120],"polar":[121],"which":[124,166],"thermolabile":[126],"or":[127],"actively":[128],"interact":[129],"water":[131],"molecules,":[132],"lower":[134],"proteins.":[137,204],"Moreover,":[138],"\u03b2-branched":[142],"aliphatic":[143],"acids":[145],"tended":[146],"increase":[148],"increasing":[150],"Overall,":[152],"these":[153],"suggest":[155],"determined":[160],"by":[161,170],"few":[163],"features,":[165],"well":[168],"captured":[169],"first":[172,181],"two":[173,182],"PCs.":[174],"A":[175],"classifier":[176,193],"only":[179],"PCs":[183],"achieved":[184],"accuracy":[187],"90%,":[189],"our":[192],"could":[194],"be":[195],"effective":[197],"efficient":[199],"tool":[200],"engineering":[202],"stable":[203]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
